View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3536_low_16 (Length: 363)
Name: NF3536_low_16
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3536_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 130 - 355
Target Start/End: Complemental strand, 37655676 - 37655455
Alignment:
| Q |
130 |
ggaagatatgataattatttgtccaattcacataaacatttggccacttctctttcttctatttccaaaattagaggtaaagaatcaaaccattgtccaa |
229 |
Q |
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| T |
37655676 |
ggaagatatgattattatttgtccaattcacataaccatttgtccacttctctttcttctatttccaaaattagaggtaaagaatgaaaccattgtccaa |
37655577 |
T |
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| Q |
230 |
attttatga----aagaataagttagatatttagatttttccactccttcaaagaactgctgactaagaaagacctccttcatacaaaacctcgaattac |
325 |
Q |
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| T |
37655576 |
attttatgaaaagaataataagttagatatttagatttttccactccttcaaacaacttctgact--------ccttcttcatacaaaacctcgaattac |
37655485 |
T |
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| Q |
326 |
accttcatacacgtttcaacaatctctgct |
355 |
Q |
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| T |
37655484 |
accttcatacacatttcaacaatttctgct |
37655455 |
T |
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