View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3536_low_17 (Length: 350)

Name: NF3536_low_17
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3536_low_17
NF3536_low_17
[»] chr3 (4 HSPs)
chr3 (28-199)||(51338144-51338316)
chr3 (273-333)||(51338556-51338616)
chr3 (220-271)||(51338336-51338387)
chr3 (31-99)||(23091042-23091110)
[»] chr2 (1 HSPs)
chr2 (30-99)||(17769284-17769353)
[»] chr5 (1 HSPs)
chr5 (28-99)||(20523754-20523825)
[»] chr1 (2 HSPs)
chr1 (28-99)||(37239352-37239423)
chr1 (30-99)||(15429715-15429784)
[»] scaffold0004 (1 HSPs)
scaffold0004 (55-105)||(372233-372283)
[»] chr6 (1 HSPs)
chr6 (30-99)||(14701048-14701117)


Alignment Details
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 51338144 - 51338316
Alignment:
Q  28 agaaattcttgcaaggtctcacaccccacacgtcatatttaatctcaaccactaaaaatatgacacatcattattattttnnnnnnn-tggaaattgatt 126  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  51338144 agaaattcttgcatggtttcacaccccacacgtcatatttaatctcaaccactaaaaatatgacacatcattattatttttaaaaaaatggaaattgatt 51338243  T
Q  127 gtcttcgacctctatctctttgccaacggtttttgcttccatactcacaaacccacatgttccaacttcaata 199  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51338244 gtcttcaacctctatctctttgccaacggtttttgcttccatactcacaaacccacatgttccaacttcaata 51338316  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 273 - 333
Target Start/End: Original strand, 51338556 - 51338616
Alignment:
Q  273 cctcacactcatcattcattggaccaccacaccgtctaatttccttttctttgttctctac 333  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||    
T  51338556 cctcacactcatcattcattggaccaccatgccgtctaatttccttttctttcttctctac 51338616  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 271
Target Start/End: Original strand, 51338336 - 51338387
Alignment:
Q  220 ctatataaaaaatttctacttcatcaacctcttgctattattttgccctcag 271  Q
    ||||||||| |||| | |||||||||||||||||||||||||||||||||||    
T  51338336 ctatataaagaattccaacttcatcaacctcttgctattattttgccctcag 51338387  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 23091042 - 23091110
Alignment:
Q  31 aattcttgcaaggtctcacaccccacacgtcatatttaatctcaaccactaaaaatatgacacatcatt 99  Q
    ||||||||||  ||||| ||||  |||| ||||||||| |||||| || |||||||| |||||||||||    
T  23091042 aattcttgcatagtctctcacctaacacctcatatttagtctcaatcaataaaaataggacacatcatt 23091110  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 17769284 - 17769353
Alignment:
Q  30 aaattcttgcaaggtctcacaccccacacgtcatatttaatctcaaccactaaaaatatgacacatcatt 99  Q
    ||||||||||| |||||| ||||  |||| ||||||||||||||||||| | |||||| |||||||||||    
T  17769284 aaattcttgcatggtctctcacctaacacctcatatttaatctcaaccaatgaaaataggacacatcatt 17769353  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 20523754 - 20523825
Alignment:
Q  28 agaaattcttgcaaggtctcacaccccacacgtcatatttaatctcaaccactaaaaatatgacacatcatt 99  Q
    ||||||||||||| |||||| ||||  |||| ||||||||| ||||||||| | |||||| |||||||||||    
T  20523754 agaaattcttgcatggtctctcacctaacacctcatatttagtctcaaccaatgaaaataggacacatcatt 20523825  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 37239352 - 37239423
Alignment:
Q  28 agaaattcttgcaaggtctcacaccccacacgtcatatttaatctcaaccactaaaaatatgacacatcatt 99  Q
    ||||||||||||| |||||| ||||  |||| ||||||||| |||||||||   |||||| |||||||||||    
T  37239352 agaaattcttgcatggtctctcacctaacacctcatatttagtctcaaccaaagaaaataggacacatcatt 37239423  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 15429784 - 15429715
Alignment:
Q  30 aaattcttgcaaggtctcacaccccacacgtcatatttaatctcaaccactaaaaatatgacacatcatt 99  Q
    ||||||||||| | |||| ||||  |||| ||||||||||||||||||| | |||||| ||||| |||||    
T  15429784 aaattcttgcatgatctctcaccttacacctcatatttaatctcaaccaatgaaaataggacacgtcatt 15429715  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 372233 - 372283
Alignment:
Q  55 acacgtcatatttaatctcaaccactaaaaatatgacacatcattattatt 105  Q
    ||||||||||||||||| ||||||||||||| || | || |||||||||||    
T  372233 acacgtcatatttaatcacaaccactaaaaacattatacgtcattattatt 372283  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 14701117 - 14701048
Alignment:
Q  30 aaattcttgcaaggtctcacaccccacacgtcatatttaatctcaaccactaaaaatatgacacatcatt 99  Q
    ||||||||||| |||||| ||||  ||||||||| |||| || ||||||  ||||| |||||||||||||    
T  14701117 aaattcttgcatggtctctcacctaacacgtcatctttagtcacaaccaacaaaaacatgacacatcatt 14701048  T

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