View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3536_low_23 (Length: 263)
Name: NF3536_low_23
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3536_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 4 - 244
Target Start/End: Complemental strand, 35111838 - 35111597
Alignment:
| Q |
4 |
cagaattgtagaccatttaaagcacatggttgctgccatattgacactatattttggggtaacttgagggcttatgaagttaaattttctagaagttgcc |
103 |
Q |
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| T |
35111838 |
cagaattgtagaccatttaaagcacatggttgctgccatgttgacaccatattttgaggtaacttgagggcttatgaagttaaattttctagaagttgcc |
35111739 |
T |
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| Q |
104 |
cttttcaattgggactcatcaggctatataggcatat--aatttgattaagcaaagaacaacgacaacctgtt--nnnnnnnnccaagaacgacaatgaa |
199 |
Q |
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| T |
35111738 |
cttttcaattgggactcatcaagctatataagcatatagaattcgattaagccaagaaca---acaacctgttcaaaaaaaagccaagaacaacaatgaa |
35111642 |
T |
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| Q |
200 |
ctcataaagatgcactacttcattgcaatcagtccctttgcttct |
244 |
Q |
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| T |
35111641 |
ctcataaaggtacaatgcttcattgcaatcactccttttggttct |
35111597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 112 - 244
Target Start/End: Original strand, 8637920 - 8638052
Alignment:
| Q |
112 |
ttgggactcatcaggctatataggcatataatttgattaagcaaagaacaacgacaacctgttnnnnnnnnccaagaacgacaatgaactcataaagatg |
211 |
Q |
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| T |
8637920 |
ttgggactcatcaagctatataggcatataatttgattacgcaaagaacaacgacaacctgttaaaaaaaaccaagaacgacaatgaactcataaagatg |
8638019 |
T |
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| Q |
212 |
cactacttcattgcaatcagtccctttgcttct |
244 |
Q |
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| T |
8638020 |
cactacttcattgcaatcagtccttttggttct |
8638052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 160
Target Start/End: Original strand, 6757584 - 6757743
Alignment:
| Q |
2 |
agcagaattgtagaccatttaaagcacatggttgctgccatat--tgacactatattttggggtaacttgagggcttatgaagttaaattttctagaagt |
99 |
Q |
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| T |
6757584 |
agcaggattgtagac-atttaaagtgcatgattgctgtcatatattgacaacatattttaaggtaacttgaggattcatgaagttaaattttatagaagt |
6757682 |
T |
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| Q |
100 |
tgcccttttcaattgggactcatcaggctatataggcatataatttgattaagcaaagaac |
160 |
Q |
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| || || ||||||||||||||||| |||||||| ||||||| | |||||||| |||||| |
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| T |
6757683 |
tacctttctcaattgggactcatcaagctatataagcatatattaggattaagccaagaac |
6757743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 6757736 - 6757792
Alignment:
| Q |
183 |
ccaagaacgacaatgaactcataaagatgcactacttcattgcaatcagtccctttg |
239 |
Q |
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| T |
6757736 |
ccaagaactacaatgaactcataaaggtgcactatttcattgcaatcactccttttg |
6757792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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