View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3536_low_25 (Length: 250)

Name: NF3536_low_25
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3536_low_25
NF3536_low_25
[»] chr4 (4 HSPs)
chr4 (9-246)||(5036170-5036413)
chr4 (115-172)||(2528738-2528796)
chr4 (26-67)||(29821361-29821402)
chr4 (188-244)||(2396162-2396218)
[»] chr3 (5 HSPs)
chr3 (26-70)||(48342300-48342344)
chr3 (24-68)||(53299810-53299854)
chr3 (26-68)||(26960922-26960964)
chr3 (26-64)||(26960849-26960887)
chr3 (206-248)||(43584358-43584400)
[»] chr6 (2 HSPs)
chr6 (26-66)||(28606479-28606519)
chr6 (24-68)||(28606553-28606597)
[»] chr7 (2 HSPs)
chr7 (188-227)||(46748255-46748294)
chr7 (24-68)||(6980893-6980937)
[»] chr2 (3 HSPs)
chr2 (26-68)||(1355977-1356019)
chr2 (35-68)||(5095806-5095839)
chr2 (24-68)||(18182534-18182578)
[»] chr1 (2 HSPs)
chr1 (24-58)||(36774852-36774886)
chr1 (188-248)||(36166746-36166806)
[»] chr5 (1 HSPs)
chr5 (9-64)||(15477207-15477262)


Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 5036413 - 5036170
Alignment:
Q  9 gagaagaaaactattgattttttgtctttttatacatttgtgacattgtggttggccaatatttagcacccaaatgtcacccaaatgctacacgagaatt 108  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| |||  ||||| ||||||||||||||||||| ||||||||    
T  5036413 gagaagaaaactat-gattttttgtctttttatacacttgtgacattgtggttgaccaatgtttgacaccccaatgtcacccaaatgctacccgagaatt 5036315  T
Q  109 t--cacatttta----cccttgctttggttaaagggccactgtggcc-taaattattacccgtactaataaaatttaagaaagtggtaagatcatcttca 201  Q
    |  |||||||||    ||||||||||||||||||||||||||||| | |||||||||||| |||||||||| |||||| |||||||||||| ||||||||    
T  5036314 tttcacattttatttacccttgctttggttaaagggccactgtgggcgtaaattattacctgtactaataagatttaataaagtggtaagaccatcttca 5036215  T
Q  202 atgagagggtcttaaccatttaagacacaatatctattagatacc 246  Q
    |||  ||||||||||||||||||||| ||||| ||||||| ||||    
T  5036214 atggaagggtcttaaccatttaagacccaatagctattaggtacc 5036170  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 2528796 - 2528738
Alignment:
Q  115 tttacccttgctttggttaaagggccactgt-ggcctaaattattacccgtactaataa 172  Q
    |||| |||||||||||||||||||||||| | |||||||||||||| || || ||||||    
T  2528796 tttagccttgctttggttaaagggccactatgggcctaaattattaaccataataataa 2528738  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 29821402 - 29821361
Alignment:
Q  26 ttttttgtctttttatacatttgtgacattgtggttggccaa 67  Q
    |||||| ||||||| |||| ||||||||||||||||||||||    
T  29821402 ttttttatctttttgtacacttgtgacattgtggttggccaa 29821361  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 2396162 - 2396218
Alignment:
Q  188 taagatcatcttcaatgagagggtcttaaccatttaagacacaatatctattagata 244  Q
    ||||| ||||||||||| |||| ||||||||||||||||| |  || ||||||||||    
T  2396162 taagaccatcttcaatgggaggttcttaaccatttaagacccggtacctattagata 2396218  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 48342300 - 48342344
Alignment:
Q  26 ttttttgtctttttatacatttgtgacattgtggttggccaatat 70  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||    
T  48342300 ttttttgtttttttgtacatttgtgacattgtggttggccaatat 48342344  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 53299810 - 53299854
Alignment:
Q  24 gattttttgtctttttatacatttgtgacattgtggttggccaat 68  Q
    |||||||||||||||| |||| |||||||||||||||||||||||    
T  53299810 gattttttgtctttttgtacacttgtgacattgtggttggccaat 53299854  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 26960922 - 26960964
Alignment:
Q  26 ttttttgtctttttatacatttgtgacattgtggttggccaat 68  Q
    |||||||||||||| |||| |||||||||||||||||||||||    
T  26960922 ttttttgtctttttctacacttgtgacattgtggttggccaat 26960964  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 26960887 - 26960849
Alignment:
Q  26 ttttttgtctttttatacatttgtgacattgtggttggc 64  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  26960887 ttttttgtctttttgtacacttgtgacattgtggttggc 26960849  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 248
Target Start/End: Original strand, 43584358 - 43584400
Alignment:
Q  206 gagggtcttaaccatttaagacacaatatctattagatacctc 248  Q
    |||||||| || |||||||||||||||||||||||| ||||||    
T  43584358 gagggtctcaaacatttaagacacaatatctattaggtacctc 43584400  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 28606519 - 28606479
Alignment:
Q  26 ttttttgtctttttatacatttgtgacattgtggttggcca 66  Q
    |||||||||||||| |||| |||||||||||||||||||||    
T  28606519 ttttttgtctttttgtacacttgtgacattgtggttggcca 28606479  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 28606553 - 28606597
Alignment:
Q  24 gattttttgtctttttatacatttgtgacattgtggttggccaat 68  Q
    |||||||||||||||| |||| ||  |||||||||||||||||||    
T  28606553 gattttttgtctttttgtacacttaagacattgtggttggccaat 28606597  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 46748294 - 46748255
Alignment:
Q  188 taagatcatcttcaatgagagggtcttaaccatttaagac 227  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  46748294 taagatcatcttcaatgggaggatcttaaccatttaagac 46748255  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 6980937 - 6980893
Alignment:
Q  24 gattttttgtctttttatacatttgtgacattgtggttggccaat 68  Q
    |||||||||| | ||| |||| |||||||||||||||||||||||    
T  6980937 gattttttgtttgtttgtacacttgtgacattgtggttggccaat 6980893  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 1355977 - 1356019
Alignment:
Q  26 ttttttgtctttttatacatttgtgacattgtggttggccaat 68  Q
    ||||||||| |||| |||| |||||||||||||||||||||||    
T  1355977 ttttttgtcattttgtacacttgtgacattgtggttggccaat 1356019  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 5095806 - 5095839
Alignment:
Q  35 tttttatacatttgtgacattgtggttggccaat 68  Q
    ||||| ||||||||||||||||||||||||||||    
T  5095806 tttttgtacatttgtgacattgtggttggccaat 5095839  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 18182578 - 18182534
Alignment:
Q  24 gattttttgtctttttatacatttgtgacattgtggttggccaat 68  Q
    |||||||||| ||||  |||| |||||||||||||||||||||||    
T  18182578 gattttttgttttttggtacacttgtgacattgtggttggccaat 18182534  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 36774886 - 36774852
Alignment:
Q  24 gattttttgtctttttatacatttgtgacattgtg 58  Q
    ||||||||||||||||||||| |||||||||||||    
T  36774886 gattttttgtctttttatacacttgtgacattgtg 36774852  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 36166746 - 36166806
Alignment:
Q  188 taagatcatcttcaatgagagggtcttaaccatttaagacacaatatctattagatacctc 248  Q
    ||||| |||||| |||||||||||||||| |||||||||| |  || ||||||| ||||||    
T  36166746 taagaccatctttaatgagagggtcttaaacatttaagactcggtacctattaggtacctc 36166806  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 15477262 - 15477207
Alignment:
Q  9 gagaagaaaactattgattttt-tgtctttttatacatttgtgacattgtggttggc 64  Q
    |||||||||||||| ||||||| | ||||||| ||||||||||||||||| ||||||    
T  15477262 gagaagaaaactat-gatttttatatctttttgtacatttgtgacattgtagttggc 15477207  T

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