View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3536_low_27 (Length: 250)

Name: NF3536_low_27
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3536_low_27
NF3536_low_27
[»] chr6 (9 HSPs)
chr6 (1-238)||(33019492-33019729)
chr6 (1-238)||(5086415-5086652)
chr6 (54-238)||(503923-504107)
chr6 (54-238)||(8263810-8263994)
chr6 (54-238)||(19227078-19227262)
chr6 (54-238)||(33639482-33639666)
chr6 (75-127)||(1334793-1334845)
chr6 (84-194)||(17874237-17874347)
chr6 (104-169)||(33745709-33745774)
[»] chr1 (7 HSPs)
chr1 (1-219)||(7178397-7178615)
chr1 (54-238)||(25505385-25505569)
chr1 (55-238)||(24314585-24314768)
chr1 (54-238)||(34709307-34709491)
chr1 (66-238)||(43810387-43810558)
chr1 (54-216)||(22576394-22576556)
chr1 (83-195)||(41181803-41181915)
[»] chr7 (14 HSPs)
chr7 (11-236)||(6970526-6970751)
chr7 (5-238)||(21439301-21439534)
chr7 (54-238)||(25923635-25923819)
chr7 (54-238)||(34518996-34519180)
chr7 (54-238)||(17804510-17804694)
chr7 (54-238)||(45987614-45987798)
chr7 (75-216)||(27941908-27942049)
chr7 (75-238)||(7377315-7377478)
chr7 (79-218)||(39060154-39060293)
chr7 (75-216)||(33796781-33796922)
chr7 (86-219)||(2009239-2009372)
chr7 (95-195)||(5356599-5356700)
chr7 (1-47)||(6970444-6970490)
chr7 (146-195)||(7459106-7459155)
[»] chr2 (5 HSPs)
chr2 (1-238)||(15017186-15017424)
chr2 (1-238)||(5325274-5325507)
chr2 (54-222)||(10978412-10978581)
chr2 (95-238)||(22725826-22725969)
chr2 (146-195)||(1379738-1379787)
[»] chr3 (4 HSPs)
chr3 (1-238)||(20894146-20894383)
chr3 (1-238)||(51144576-51144813)
chr3 (66-190)||(54558869-54558992)
chr3 (83-195)||(11639559-11639671)
[»] chr4 (19 HSPs)
chr4 (1-238)||(19113946-19114184)
chr4 (1-238)||(30309959-30310194)
chr4 (63-239)||(7472980-7473156)
chr4 (54-238)||(19644555-19644739)
chr4 (1-238)||(48031534-48031770)
chr4 (54-238)||(8934666-8934850)
chr4 (54-238)||(33988160-33988344)
chr4 (75-238)||(29554132-29554295)
chr4 (54-175)||(23119000-23119121)
chr4 (83-238)||(40150183-40150338)
chr4 (101-195)||(10563744-10563838)
chr4 (54-115)||(23657237-23657298)
chr4 (83-195)||(18935261-18935373)
chr4 (119-195)||(53779674-53779750)
chr4 (139-189)||(3861224-3861274)
chr4 (139-189)||(3869981-3870031)
chr4 (101-195)||(29213416-29213509)
chr4 (146-195)||(42777894-42777943)
chr4 (83-195)||(12881120-12881232)
[»] chr5 (6 HSPs)
chr5 (1-238)||(11575085-11575322)
chr5 (55-238)||(22095642-22095825)
chr5 (153-238)||(5415537-5415622)
chr5 (54-238)||(3727766-3727950)
chr5 (59-127)||(5415650-5415718)
chr5 (146-195)||(40089995-40090044)
[»] chr8 (3 HSPs)
chr8 (1-130)||(13909139-13909268)
chr8 (54-238)||(4988457-4988641)
chr8 (55-238)||(36318882-36319065)
[»] scaffold0108 (1 HSPs)
scaffold0108 (56-238)||(10475-10657)
[»] scaffold0007 (1 HSPs)
scaffold0007 (83-195)||(181722-181834)


Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 33019492 - 33019729
Alignment:
Q  1 agcacaaggcgtgcctcgaaaactcgtcaagaaacaccaaaatgtagaagtcggtacaacaacaaaaccaactcagccaatacccaaacattgtaaaggg 100  Q
    ||||||||||||||||| || |||| |||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  33019492 agcacaaggcgtgcctcaaagactcatcaagaaacaccgaaatgtagaagtcagtactacaacaaaaccaactcagccaatacccaaacattgtaaaggg 33019591  T
Q  101 cttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgtcaaacaacctggggaaag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||    
T  33019592 cttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttatcaagcaacctgggcaaag 33019691  T
Q  201 gagtaacagaattattaaaacatctattgttacgttca 238  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  33019692 gagtaacataattattaaaacacctattgttacgttca 33019729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 5086652 - 5086415
Alignment:
Q  1 agcacaaggcgtgcctcgaaaactcgtcaagaaacaccaaaatgtagaagtcggtacaacaacaaaaccaactcagccaatacccaaacattgtaaaggg 100  Q
    |||||||||| |||||| || | || ||||| |  | ||||||  ||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||    
T  5086652 agcacaaggcatgcctcaaagattcctcaaggaggaacaaaattcagaagtctgtacaacaacaaaaccaacttagccaatactcaaacattgtaaaggg 5086553  T
Q  101 cttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgtcaaacaacctggggaaag 200  Q
     |||||||||| ||| |||| ||||||| ||||||| ||||||||||||||||||||||||| ||| |||||||||||||||| | ||||||||| ||||    
T  5086552 gttgaccaccatctaatagtgccaaacaaaaaagaggcttttctagctttcaaccaacctaaggacgaatattttactttgtcgagcaacctgggcaaag 5086453  T
Q  201 gagtaacagaattattaaaacatctattgttacgttca 238  Q
    |||||||| |||||||||||||  ||||||||||||||    
T  5086452 gagtaacataattattaaaacacttattgttacgttca 5086415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 54 - 238
Target Start/End: Complemental strand, 504107 - 503923
Alignment:
Q  54 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 153  Q
    |||||||| ||||||||| | |||||||||||||||||||||| ||| ||||||||||||||  ||||||||||| ||||||   |||||||||||||||    
T  504107 gtacaacagcaaaaccaagttagccaatacccaaacattgtaacgggtttgaccaccaactaaaagtaccaaacaaaaaagaagtttttctagctttcaa 504008  T
Q  154 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 238  Q
    ||||||||||||||||||||||||||| |||| ||||||||| |||||||||| ||||| ||| |||||  |||| |||||||||    
T  504007 ccaacctaaagacaaatattttactttatcaagcaacctgggtaaaggagtaatagaatcattgaaacacatattattacgttca 503923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 54 - 238
Target Start/End: Original strand, 8263810 - 8263994
Alignment:
Q  54 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 153  Q
    |||||||| ||||||||| | |||||||||||||||||||||| ||| ||||||||||||||  |||||||||||  |||||  ||||||||||||||||    
T  8263810 gtacaacagcaaaaccaagttagccaatacccaaacattgtaacgggtttgaccaccaactaaaagtaccaaacaataaagaagcttttctagctttcaa 8263909  T
Q  154 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 238  Q
    ||||||||||||||||||||||||||| |||| ||||||||  |||||||||| ||||| ||| |||||  ||||||||||||||    
T  8263910 ccaacctaaagacaaatattttactttatcaagcaacctggataaaggagtaatagaatcattgaaacacatattgttacgttca 8263994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 54 - 238
Target Start/End: Original strand, 19227078 - 19227262
Alignment:
Q  54 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 153  Q
    |||||| ||||||| ||| | |||||||||||||||||||||| ||| ||||||||||||||  ||| ||||||| ||||||  | ||||||||||||||    
T  19227078 gtacaataacaaaaacaagttagccaatacccaaacattgtaacgggtttgaccaccaactaaaagtgccaaacaaaaaagaagcgtttctagctttcaa 19227177  T
Q  154 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 238  Q
    |||||||| |||||||||||| |||||||||| ||||||| | |||||||||| ||||  ||| |||||  ||||||||||||||    
T  19227178 ccaacctagagacaaatatttaactttgtcaagcaacctgagtaaaggagtaatagaagcattgaaacacatattgttacgttca 19227262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 54 - 238
Target Start/End: Original strand, 33639482 - 33639666
Alignment:
Q  54 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 153  Q
    |||||||||||||| ||| | |||| ||||||||||||||||| ||| ||||||||||||||  |||  |||||| ||||||  | ||||||||||||||    
T  33639482 gtacaacaacaaaaacaagttagccgatacccaaacattgtaacgggtttgaccaccaactaaaagtgtcaaacaaaaaagaagcgtttctagctttcaa 33639581  T
Q  154 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 238  Q
    ||||||||  ||||||||||| |||||||||| ||||||||| |||||||||| ||||| ||| |||||  ||||||||||||||    
T  33639582 ccaacctagggacaaatatttaactttgtcaagcaacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttca 33639666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 1334845 - 1334793
Alignment:
Q  75 agccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaac 127  Q
    ||||||||||||||||||| ||||||||||||||||| |||| ||||||||||    
T  1334845 agccaatacccaaacattgaaaagggcttgaccaccacctatcagtaccaaac 1334793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 194
Target Start/End: Complemental strand, 17874347 - 17874237
Alignment:
Q  84 ccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgtc 183  Q
    |||||||||| || || ||||| |||||  |||  || |||||| |||||   |||||| | |||||||||||  |||||||||||||||| ||||| ||    
T  17874347 ccaaacattggaagggacttgagcaccacttatatgtgccaaacctaaaaacaacttttttggctttcaaccaggctaaagacaaatatttaactttatc 17874248  T
Q  184 aaacaacctgg 194  Q
     ||||||||||    
T  17874247 taacaacctgg 17874237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 33745709 - 33745774
Alignment:
Q  104 gaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaa 169  Q
    |||||||||||| |||| ||||||| |||   ||| ||| ||||||||||||| ||||||||||||    
T  33745709 gaccaccaactagtagtcccaaacacaaacatgacatttttagctttcaaccaccctaaagacaaa 33745774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 7178397 - 7178615
Alignment:
Q  1 agcacaaggcgtgcctcgaaaactcgtcaagaaacaccaaaatgtagaagtcggtacaacaacaaaaccaactcagccaatacccaaacattgtaaaggg 100  Q
    ||||||||||||||||| || ||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  7178397 agcacaaggcgtgcctcaaagactcgtcaagaaacaccaaaaagtagaagtcagtacaacaacgaaaccaactcagccaatacccaaacattgtaaaggg 7178496  T
Q  101 cttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgtcaaacaacctggggaaag 200  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||    
T  7178497 cttgaccaccaactattagtgccaaatataaaagagacttttctagctttcaaccaacctaaagacagatattttactttgtcaagcaacctgggcaaag 7178596  T
Q  201 gagtaacagaattattaaa 219  Q
    |||||||| ||||||||||    
T  7178597 gagtaacataattattaaa 7178615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 54 - 238
Target Start/End: Complemental strand, 25505569 - 25505385
Alignment:
Q  54 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 153  Q
    |||||||||||||||||| | |||||||||||||||||||||| ||| ||||||||||||||  ||| ||||||| ||||||  | ||||||||||||||    
T  25505569 gtacaacaacaaaaccaagttagccaatacccaaacattgtaacgggtttgaccaccaactaaaagtgccaaacaaaaaagaagcgtttctagctttcaa 25505470  T
Q  154 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 238  Q
    ||||| ||||||||||||||||||||| |||| ||||||||| |||||||||| ||||| ||| |||||  |||||||| |||||    
T  25505469 ccaacttaaagacaaatattttactttatcaagcaacctgggtaaaggagtaatagaatcattgaaacacatattgttatgttca 25505385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 55 - 238
Target Start/End: Original strand, 24314585 - 24314768
Alignment:
Q  55 tacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaac 154  Q
    |||||| |||||||||| | |||||||||||||||||||||| ||| |||||||||||||| |||| ||||||| ||||||   ||||||||| ||||||    
T  24314585 tacaaccacaaaaccaagttagccaatacccaaacattgtaacgggtttgaccaccaactaatagtgccaaacaaaaaagaagtttttctagccttcaac 24314684  T
Q  155 caacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 238  Q
    |||||||||||||||||||| ||||| |||| ||||||||| |||||||||| ||||| ||| ||| |  ||||||||||||||    
T  24314685 caacctaaagacaaatatttaactttatcaagcaacctgggtaaaggagtaatagaatcattgaaaaacatattgttacgttca 24314768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 54 - 238
Target Start/End: Complemental strand, 34709491 - 34709307
Alignment:
Q  54 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 153  Q
    |||| ||||||||||||||| || |||| |||| ||||||||||||||||||| |||| |||| ||| ||||||| |||||   ||||||||| || ||     
T  34709491 gtacgacaacaaaaccaacttagtcaatgcccagacattgtaaagggcttgacaaccacctatcagtgccaaacaaaaaagtagcttttctagtttccag 34709392  T
Q  154 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 238  Q
    |||||||||||||||||||||||||||||| | |||||| || |||||||||| ||||||||| ||||| || ||||||||||||    
T  34709391 ccaacctaaagacaaatattttactttgtcgagcaacctaggcaaaggagtaaaagaattattgaaacacctgttgttacgttca 34709307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 43810387 - 43810558
Alignment:
Q  66 aaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaaga 165  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||| |||| |||||||| |  ||| |  |||||||||||||||||||||||||||||    
T  43810387 aaccaact-agccaatacccaaacattggaaagggcttgaccaccacctatcagtaccaagcgaaaatgtaacttttctagctttcaaccaacctaaaga 43810485  T
Q  166 caaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 238  Q
    ||| ||||||||||| || |||||||| || | |||||||| ||||||||| ||  | ||||| |||||||||    
T  43810486 caagtattttactttatccaacaacctaggcataggagtaatagaattattgaacaacctattattacgttca 43810558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 216
Target Start/End: Original strand, 22576394 - 22576556
Alignment:
Q  54 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 153  Q
    ||||||||||||||   | | ||||||| ||||||||||| ||||||||||||||||  |||| || |||||||  ||| | | ||||| || ||||||     
T  22576394 gtacaacaacaaaaatcaattagccaatgcccaaacattgaaaagggcttgaccaccccctatcagaaccaaacgaaaaggtggcttttttatctttcag 22576493  T
Q  154 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattatt 216  Q
    ||| |||||||| || |||||||||||||| | |||||| || | | |||||| |||||||||    
T  22576494 ccagcctaaagaaaagtattttactttgtccagcaacctaggcatatgagtaatagaattatt 22576556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 41181803 - 41181915
Alignment:
Q  83 cccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgt 182  Q
    |||||| |||| || |||||||| ||||| ||||  | ||||||| |||||   || ||| | |||||||||||  ||||||||| |||||| ||||| |    
T  41181803 cccaaatattggaaggggcttgagcaccatctatctgaaccaaacctaaaaacaacctttttggctttcaaccaggctaaagacatatatttaactttat 41181902  T
Q  183 caaacaacctggg 195  Q
    | |||||||||||    
T  41181903 ctaacaacctggg 41181915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 6970526 - 6970751
Alignment:
Q  11 gtgcctcgaaaactcgtcaagaaacaccaaaatgtagaagtcggtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccacc 110  Q
    ||||||| || ||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6970526 gtgcctcaaagactcgtccagaaacaccaaaatgtagaagtcagtacaacaacaaaatcaactcagccaatacccaaacattgtaaagggcttgaccacc 6970625  T
Q  111 aactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacaga 210  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| |||| |||| ||||||||||||||    
T  6970626 aactattagtaccaaacataaaagaaacttttctaactttcaaccgacctaaagacaaatattttactttgtcaagcaacttgggcaaaggagtaacaga 6970725  T
Q  211 attattaaaacatctattgttacgtt 236  Q
    ||||||||||||  ||||||||||||    
T  6970726 attattaaaacacttattgttacgtt 6970751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 21439534 - 21439301
Alignment:
Q  5 caaggcgtgcctcgaaaactcgtcaagaaacaccaaaatgtagaagtcggtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttg 104  Q
    ||||||||||||| || ||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21439534 caaggcgtgcctcaaagactcgtcaagaaacaccaaaaagtagaagtcagtacaacaacgaaaccaactcagccaatacccaaacattgtaaagggcttg 21439435  T
Q  105 accaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagt 204  Q
    |||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||    
T  21439434 accaccaactattagtgccaagcataaaagagacttttctacctttcaaccaacctaaggacaaatattttactttgtcaagcaacctgggcaaaggagt 21439335  T
Q  205 aacagaattattaaaacatctattgttacgttca 238  Q
     |||  |||||||||||| |||||||||||||||    
T  21439334 cacatgattattaaaacacctattgttacgttca 21439301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 54 - 238
Target Start/End: Original strand, 25923635 - 25923819
Alignment:
Q  54 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 153  Q
    |||||||| ||||||||| | |||||||||||||||||||||| ||| ||||||||||||||  ||||||||||| ||||||  |||||||||||||||     
T  25923635 gtacaacagcaaaaccaagttagccaatacccaaacattgtaacgggtttgaccaccaactaaaagtaccaaacaaaaaagaagcttttctagctttcag 25923734  T
Q  154 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 238  Q
    ||||||||||||||||||||||||||| |||| ||||||||| |||||||||| ||||| ||| |||||  ||||||||||||||    
T  25923735 ccaacctaaagacaaatattttactttatcaagcaacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttca 25923819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 54 - 238
Target Start/End: Complemental strand, 34519180 - 34518996
Alignment:
Q  54 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 153  Q
    |||||||||||||| ||| | |||||||||||||||||||||| ||| ||||||||||||||  ||| ||||||| ||||||  | ||||||||||||||    
T  34519180 gtacaacaacaaaaacaagttagccaatacccaaacattgtaacgggtttgaccaccaactaaaagtgccaaacaaaaaagaagcgtttctagctttcaa 34519081  T
Q  154 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 238  Q
    |||||||| |||||||||||| |||||||||| ||||||||| |||||||||| ||||| ||| |||||  ||||||||||||||    
T  34519080 ccaacctagagacaaatatttaactttgtcaagcaacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttca 34518996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 54 - 238
Target Start/End: Original strand, 17804510 - 17804694
Alignment:
Q  54 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 153  Q
    |||||||||||||| ||| | |||||||||||||||||||||| ||| ||||||||||||||  ||||||||||| ||||||  ||||||||| ||||||    
T  17804510 gtacaacaacaaaatcaagttagccaatacccaaacattgtaacgggtttgaccaccaactaaaagtaccaaacaaaaaagaagcttttctagttttcaa 17804609  T
Q  154 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 238  Q
    ||||||||||||||||||||||||||| |||| ||| ||||| | |||| ||| ||||| ||| |||||  ||||||||||||||    
T  17804610 ccaacctaaagacaaatattttactttatcaagcaatctgggtataggaataatagaatcattgaaacacatattgttacgttca 17804694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 54 - 238
Target Start/End: Original strand, 45987614 - 45987798
Alignment:
Q  54 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 153  Q
    |||||||||||||| ||| | |||||||||||||||||| ||| ||| ||||||||||||||  ||| ||||||| ||||||  | ||||||||||||||    
T  45987614 gtacaacaacaaaaacaagttagccaatacccaaacattataacgggtttgaccaccaactaaaagtgccaaacaaaaaagaagcgtttctagctttcaa 45987713  T
Q  154 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 238  Q
    |||||||| |||||||||||| |||||||||| ||||||||| |||||||||| ||||| ||| |||||  ||||||||||||||    
T  45987714 ccaacctagagacaaatatttaactttgtcaagcaacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttca 45987798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 75 - 216
Target Start/End: Complemental strand, 27942049 - 27941908
Alignment:
Q  75 agccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaa-agagacttttctagctttcaaccaacctaaagacaaatatt 173  Q
    ||||||||||||||||||| ||||||||||||||||| |||| ||||||||||  ||| | || ||||| |||||||||||||| |||||||||| ||||    
T  27942049 agccaatacccaaacattgaaaagggcttgaccaccacctatcagtaccaaacgaaaatatag-cttttttagctttcaaccaagctaaagacaagtatt 27941951  T
Q  174 ttactttgtcaaacaacctggggaaaggagtaacagaattatt 216  Q
    |||||||||| |||||||| || | |||||||| |||||||||    
T  27941950 ttactttgtccaacaacctaggcataggagtaatagaattatt 27941908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 75 - 238
Target Start/End: Original strand, 7377315 - 7377478
Alignment:
Q  75 agccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattt 174  Q
    ||||||||||||||||||| ||||||||||||||||| |||| ||||||||||  ||| | | | ||| || |||||| ||||||||||||||| |||||    
T  7377315 agccaatacccaaacattggaaagggcttgaccaccacctatcagtaccaaacgaaaatgtggcatttttaactttcagccaacctaaagacaagtattt 7377414  T
Q  175 tactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 238  Q
    ||||||||| | |||||| || | |||||||| | ||||||| ||  | |||||||||||||||    
T  7377415 tactttgtccagcaacctaggtataggagtaatacaattattgaacaacctattgttacgttca 7377478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 79 - 218
Target Start/End: Complemental strand, 39060293 - 39060154
Alignment:
Q  79 aatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttact 178  Q
    |||||| |||||||| |||||| |||||||||| |||| ||||||||||  |||  | |||||| ||| |||||||||| |||||||||| |||||||||    
T  39060293 aatacctaaacattgaaaagggtttgaccaccacctatcagtaccaaacgaaaataaaacttttttagttttcaaccaagctaaagacaagtattttact 39060194  T
Q  179 ttgtcaaacaacctggggaaaggagtaacagaattattaa 218  Q
    ||||| |||||||| || | |||||||| | |||||||||    
T  39060193 ttgtccaacaacctaggcataggagtaataaaattattaa 39060154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 75 - 216
Target Start/End: Complemental strand, 33796922 - 33796781
Alignment:
Q  75 agccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattt 174  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||  |||||||||| ||| | | ||||| || ||||||  || ||||||||||| |||||    
T  33796922 agccaatacccaaacattgaaaagggcttgaacaccacctatctgtaccaaacaaaaaggtggcttttttaactttcagtcagcctaaagacaagtattt 33796823  T
Q  175 tactttgtcaaacaacctggggaaaggagtaacagaattatt 216  Q
    |||| |||| | |||||| || | |||||||| |||||||||    
T  33796822 tactatgtccagcaacctaggcataggagtaatagaattatt 33796781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 219
Target Start/End: Complemental strand, 2009372 - 2009239
Alignment:
Q  86 aaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgtcaa 185  Q
    |||||||| |||||| |||||||||| |||| | || |||||  ||| | | ||||| ||||||||| ||| || |||||||| ||||| |||||||| |    
T  2009372 aaacattggaaagggtttgaccaccacctatcaatatcaaacgaaaaggtggcttttttagctttcagccagccaaaagacaagtatttcactttgtcca 2009273  T
Q  186 acaacctggggaaaggagtaacagaattattaaa 219  Q
     |||||| || | |||||||  ||||||||||||    
T  2009272 gcaacctaggcataggagtactagaattattaaa 2009239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 5356599 - 5356700
Alignment:
Q  95 aaagggcttgaccaccaactattagtaccaaacataaaagagacttttctag-ctttcaaccaacctaaagacaaatattttactttgtcaaacaacctg 193  Q
    ||||||||||||||||| | || ||||||||||  ||||  | ||||| | | | ||||||||||||| |||||| |||||||||||||| |||||||||    
T  5356599 aaagggcttgaccaccacccatcagtaccaaacgaaaaaatggctttttttggccttcaaccaacctagagacaagtattttactttgtccaacaacctg 5356698  T
Q  194 gg 195  Q
    ||    
T  5356699 gg 5356700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 6970444 - 6970490
Alignment:
Q  1 agcacaaggcgtgcctcgaaaactcgtcaagaaacaccaaaatgtag 47  Q
    ||||||||||||||||| || ||||||| ||||||||||||||||||    
T  6970444 agcacaaggcgtgcctcaaagactcgtccagaaacaccaaaatgtag 6970490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 7459155 - 7459106
Alignment:
Q  146 gctttcaaccaacctaaagacaaatattttactttgtcaaacaacctggg 195  Q
    |||||||||||  |||||||||||||||| ||||| || |||||||||||    
T  7459155 gctttcaaccaggctaaagacaaatatttaactttatctaacaacctggg 7459106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 15017186 - 15017424
Alignment:
Q  1 agcacaaggcgtgcctcgaaaactcgtcaagaaa-caccaaaatgtagaagtcggtacaacaacaaaaccaactcagccaatacccaaacattgtaaagg 99  Q
    ||||||||||||||||| || ||||||||||||| |||||||| ||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||    
T  15017186 agcacaaggcgtgcctcaaagactcgtcaagaaaacaccaaaaagtagaagtcagtacaacaacgaaaccaactcaaccaatacccaaacattgtaaagg 15017285  T
Q  100 gcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgtcaaacaacctggggaaa 199  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||| |||    
T  15017286 gcttgaccaccaactattagtgtcaaacataaaagagacttttctaactttcaaccaacctaaggacaaatattttactttgtcaagcaacctgggcaaa 15017385  T
Q  200 ggagtaacagaattattaaaacatctattgttacgttca 238  Q
    ||||| |||  |||||||||||| |||||||||||||||    
T  15017386 ggagtcacatgattattaaaacacctattgttacgttca 15017424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 5325274 - 5325507
Alignment:
Q  1 agcacaaggcgtgcctcgaaaactcgtcaagaaacaccaaaatgtagaagtcggtacaacaacaaaaccaactcagccaatacccaaacattgtaaaggg 100  Q
    ||||||||||||||||| || ||||||||||||||||||||| ||||||||    |||||||| |||||||||||||||||| |||||||||||||||||    
T  5325274 agcacaaggcgtgcctcaaagactcgtcaagaaacaccaaaaagtagaagt----acaacaacgaaaccaactcagccaatatccaaacattgtaaaggg 5325369  T
Q  101 cttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgtcaaacaacctggggaaag 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||| |||||| || ||||    
T  5325370 cttgaccaccaactattagtgccaaacataaaagagacttttctaactttcaaccaacctaaggacagatattttactttgtcaagcaacctcggcaaag 5325469  T
Q  201 gagtaacagaattattaaaacatctattgttacgttca 238  Q
     ||||||  ||||||||||||| |||||||||||||||    
T  5325470 aagtaacgtaattattaaaacacctattgttacgttca 5325507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 54 - 222
Target Start/End: Complemental strand, 10978581 - 10978412
Alignment:
Q  54 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaa-gagacttttctagctttca 152  Q
    |||||||| ||||| ||| | ||||||||| |||||||||||| ||| ||||||||||||||  | || |||||| |||| ||  |||||||||||||||    
T  10978581 gtacaacagcaaaaacaagttagccaatactcaaacattgtaacgggtttgaccaccaactaaaaatatcaaacaaaaaaagaagcttttctagctttca 10978482  T
Q  153 accaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaaca 222  Q
    |||||||||||||||||||||||||||| |||| ||||||||| |||||||||| ||||| ||| |||||    
T  10978481 accaacctaaagacaaatattttactttatcaagcaacctgggtaaaggagtaatagaatcattgaaaca 10978412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 238
Target Start/End: Complemental strand, 22725969 - 22725826
Alignment:
Q  95 aaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgtcaaacaacctgg 194  Q
    ||||||||||||||||| ||||  |||||| ||||||| | | | ||| | ||||||| ||| |||||||||||||||||||||||||  | ||||||||    
T  22725969 aaagggcttgaccaccacctatcggtaccatacataaaggtggcctttttggctttcagccatcctaaagacaaatattttactttgttcagcaacctgg 22725870  T
Q  195 ggaaaggagtaacagaattattaaaacatctattgttacgttca 238  Q
      | |||||||| || |||||||||  | |||||||||| ||||    
T  22725869 aaataggagtaatagtattattaaataacctattgttacattca 22725826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 1379738 - 1379787
Alignment:
Q  146 gctttcaaccaacctaaagacaaatattttactttgtcaaacaacctggg 195  Q
    |||||||||||| ||||||||| |||||| |||||||| |||| ||||||    
T  1379738 gctttcaaccaagctaaagacatatatttaactttgtctaacagcctggg 1379787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 20894383 - 20894146
Alignment:
Q  1 agcacaaggcgtgcctcgaaaactcgtcaagaaacaccaaaatgtagaagtcggtacaacaacaaaaccaactcagccaatacccaaacattgtaaaggg 100  Q
    |||| |||||||||||| || ||||||||||||||||||||| ||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||    
T  20894383 agcataaggcgtgcctcaaagactcgtcaagaaacaccaaaaagtagaagtcagtacaacaacgaaaccatctcagccaatacccaaacattgtaaaggg 20894284  T
Q  101 cttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgtcaaacaacctggggaaag 200  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||| || | ||||||||||||||||| ||||||||| ||||    
T  20894283 cttgaccaccaactattagtgccaaatataaaagagacttttctagctttcaaccaacttaaggatagatattttactttgtcaagcaacctgggcaaag 20894184  T
Q  201 gagtaacagaattattaaaacatctattgttacgttca 238  Q
    ||||||||   |||||||||||  ||||||||||||||    
T  20894183 gagtaacatggttattaaaacacttattgttacgttca 20894146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 51144576 - 51144813
Alignment:
Q  1 agcacaaggcgtgcctcgaaaactcgtcaagaaacaccaaaatgtagaagtcggtacaacaacaaaaccaactcagccaatacccaaacattgtaaaggg 100  Q
    |||||||| |||||| | || |||| |||||||||| |||| |  || ||||  ||||||||||||||||| | |||||||||||| |||||||||||||    
T  51144576 agcacaagacgtgccaccaagactcctcaagaaacaacaaagttcagtagtctttacaacaacaaaaccaaattagccaatacccagacattgtaaaggg 51144675  T
Q  101 cttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgtcaaacaacctggggaaag 200  Q
    |||||||||||||||||||| ||||||| |||||    ||||||||||||||||||||||||||||||||||||||||||| | | ||||||||| ||||    
T  51144676 cttgaccaccaactattagtgccaaacaaaaaagtagtttttctagctttcaaccaacctaaagacaaatattttactttgccgagcaacctgggcaaag 51144775  T
Q  201 gagtaacagaattattaaaacatctattgttacgttca 238  Q
    |||||| ||||||||| ||||| |||||||||||||||    
T  51144776 gagtaatagaattattgaaacacctattgttacgttca 51144813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 190
Target Start/End: Complemental strand, 54558992 - 54558869
Alignment:
Q  66 aaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaaga 165  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||| |||| |||||| |||  ||| |  |||||| ||||||||||||||| ||||||    
T  54558992 aaccaact-agccaatacccaaacattggaaagggcttgaccaccacctatcagtacctaacgaaaatgtaacttttttagctttcaaccaacttaaaga 54558894  T
Q  166 caaatattttactttgtcaaacaac 190  Q
    ||||||||||||||| || ||||||    
T  54558893 caaatattttactttatctaacaac 54558869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 11639559 - 11639671
Alignment:
Q  83 cccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgt 182  Q
    ||||| |||||||| || ||||| ||||| ||||  | ||||||| |||||   || ||| | |||||||||||  ||||||||| |||||| ||||| |    
T  11639559 cccaagcattgtaagggacttgaacaccacctatctgaaccaaacctaaaaaccacctttttggctttcaaccaggctaaagacatatatttaactttat 11639658  T
Q  183 caaacaacctggg 195  Q
    | |||||||||||    
T  11639659 ctaacaacctggg 11639671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 19113946 - 19114184
Alignment:
Q  1 agcacaaggcgtgcctcgaaaactcgtcaagaaa-caccaaaatgtagaagtcggtacaacaacaaaaccaactcagccaatacccaaacattgtaaagg 99  Q
    |||||||||| |||||| || ||||||||||||| |||||||| ||||||||| | |||||||| | ||||||||||||||||| |||||||||||||||    
T  19113946 agcacaaggcatgcctcaaagactcgtcaagaaaacaccaaaaagtagaagtcagaacaacaacgacaccaactcagccaatactcaaacattgtaaagg 19114045  T
Q  100 gcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgtcaaacaacctggggaaa 199  Q
    |||||| |||||||||| ||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||    
T  19114046 gcttgatcaccaactatgagtgccaaacataaaatagacttttctagctttcaaccaacctaaggacaaatattttactttgtcaagcaacctgggcaaa 19114145  T
Q  200 ggagtaacagaattattaaaacatctattgttacgttca 238  Q
    ||||| |||  |||||||||||| ||||||||| |||||    
T  19114146 ggagtcacatgattattaaaacacctattgttatgttca 19114184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 30309959 - 30310194
Alignment:
Q  1 agcacaaggcgtgcctcgaaaactcgtcaagaaa-caccaaaatgtagaagtcggtacaacaacaaaaccaactcagccaatacccaaacattgtaaagg 99  Q
    ||||||||||||||||| || ||||||||||||| |||||||| |||||||||  ||||||||| | |||||||||||||||| ||||||||||||||||    
T  30309959 agcacaaggcgtgcctcaaagactcgtcaagaaaacaccaaaaagtagaagtcaatacaacaacgacaccaactcagccaatatccaaacattgtaaagg 30310058  T
Q  100 gcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgtcaaacaacctggggaaa 199  Q
    | |||||||||||   | ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||    
T  30310059 gtttgaccaccaa---tgagtgccaaacataaaagagacttttctagctttcaaccaacctaaggacaaatattttactttgtcaagcaacctgggcaaa 30310155  T
Q  200 ggagtaacagaattattaaaacatctattgttacgttca 238  Q
    ||||| | |  |||||||||||| |||||||||||||||    
T  30310156 ggagtcatatgattattaaaacacctattgttacgttca 30310194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 63 - 239
Target Start/End: Original strand, 7472980 - 7473156
Alignment:
Q  63 caaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaa 162  Q
    ||||||||| | |||||||||||||||||||||| ||| ||||||||||||||  ||| ||||||| ||||||  |||||||||||||||||||||||||    
T  7472980 caaaaccaagttagccaatacccaaacattgtaacgggtttgaccaccaactaaaagtgccaaacaaaaaagaagcttttctagctttcaaccaacctaa 7473079  T
Q  163 agacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttcat 239  Q
    |||||||||||||||||| |||| ||||||||| |||||||||| ||||| ||| |||||  |||||||||||||||    
T  7473080 agacaaatattttactttatcaagcaacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttcat 7473156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 54 - 238
Target Start/End: Original strand, 19644555 - 19644739
Alignment:
Q  54 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 153  Q
    |||||||||||||| ||| | |||||||||||||||||||||| ||| ||||||||||||||  | | ||||||| ||||||  | ||||||||||||||    
T  19644555 gtacaacaacaaaaacaagttagccaatacccaaacattgtaacgggtttgaccaccaactaaaaatgccaaacaaaaaagaagcgtttctagctttcaa 19644654  T
Q  154 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 238  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| ||| |||||  ||||||||||||||    
T  19644655 ccaacctaaagacaaatattttactttgtcaagcaacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttca 19644739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 48031770 - 48031534
Alignment:
Q  1 agcacaaggcgtgcctcgaaaactcgtcaagaaacaccaaaatgtagaagtcggtacaacaacaaaaccaactcagccaatacccaaacattgtaaaggg 100  Q
    ||||||||||||||| | || ||| ||||||||||| |||| |  || |||   ||||||||||||||||||| |||||||||||| | ||||||||||     
T  48031770 agcacaaggcgtgccacaaagactagtcaagaaacagcaaagttcaggagtatctacaacaacaaaaccaacttagccaatacccagaaattgtaaagg- 48031672  T
Q  101 cttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgtcaaacaacctggggaaag 200  Q
    |||| |||||| |||||||| ||||| | |||||  |||||||||||||| |||||||||||||||||||||||||||||||| |  |||||||| ||||    
T  48031671 cttgcccaccatctattagtgccaaataaaaaagtaacttttctagcttttaaccaacctaaagacaaatattttactttgtcgagtaacctgggcaaag 48031572  T
Q  201 gagtaacagaattattaaaacatctattgttacgttca 238  Q
    |||||| ||||||||  ||||| ||||| |||||||||    
T  48031571 gagtaatagaattatcgaaacacctattattacgttca 48031534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 54 - 238
Target Start/End: Original strand, 8934666 - 8934850
Alignment:
Q  54 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 153  Q
    |||||||||||||||||| | |||||||||||||||||| ||| ||| ||||||||||||||  ||| ||||||| ||||||  ||||||||||||||||    
T  8934666 gtacaacaacaaaaccaagttagccaatacccaaacattataacgggtttgaccaccaactaaaagttccaaacaaaaaagaagcttttctagctttcaa 8934765  T
Q  154 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 238  Q
    |||||||||||||||||| |||||||| |||| ||||||||| |||||||||| | ||| ||| |||||  ||||||||||||||    
T  8934766 ccaacctaaagacaaatagtttactttatcaagcaacctgggtaaaggagtaataaaatcattgaaacacatattgttacgttca 8934850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 54 - 238
Target Start/End: Complemental strand, 33988344 - 33988160
Alignment:
Q  54 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 153  Q
    |||||||||||||||||| | |||||||||||||||||||||| ||| ||||||||||| ||  ||| ||||||| ||||||  | ||||||||||||||    
T  33988344 gtacaacaacaaaaccaagttagccaatacccaaacattgtaacgggtttgaccaccaattaaaagtgccaaacaaaaaagaagcgtttctagctttcaa 33988245  T
Q  154 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 238  Q
    |||||||||||| ||||||||||||||||||| ||||||||| |||||||||| ||||| ||| |||||  |||| |||||||||    
T  33988244 ccaacctaaagataaatattttactttgtcaagcaacctgggtaaaggagtaatagaatcattgaaacacatattattacgttca 33988160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 75 - 238
Target Start/End: Complemental strand, 29554295 - 29554132
Alignment:
Q  75 agccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattt 174  Q
    ||||||||| ||||||||| ||||||||||||||||| |||| ||||||||||  |||  |  ||||| |||||||||||||| |||||||||| |||||    
T  29554295 agccaatactcaaacattgaaaagggcttgaccaccacctatcagtaccaaacgaaaataaagcttttttagctttcaaccaagctaaagacaagtattt 29554196  T
Q  175 tactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 238  Q
    ||||||||| |||||||| || | |||||||| ||||||||| ||  | ||||| |||||||||    
T  29554195 tactttgtccaacaacctaggcataggagtaatagaattattgaacaacctattattacgttca 29554132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 23119000 - 23119121
Alignment:
Q  54 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 153  Q
    ||||||||||||||||||   |||||||||||| ||||||||| ||| ||||||||||||||  ||||||||||| |||| |   |||||||||||||||    
T  23119000 gtacaacaacaaaaccaagctagccaatacccagacattgtaacgggtttgaccaccaactaaaagtaccaaacaaaaaaaaagtttttctagctttcaa 23119099  T
Q  154 ccaacctaaagacaaatatttt 175  Q
    ||||||||||||||||||||||    
T  23119100 ccaacctaaagacaaatatttt 23119121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 238
Target Start/End: Original strand, 40150183 - 40150338
Alignment:
Q  83 cccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgt 182  Q
    ||||||||||| |||||| | |||||||| ||||| ||  |||||||||| | ||||||| | ||||||| |||||||| |||||| ||||||||||| |    
T  40150183 cccaaacattgaaaagggttcgaccaccacctatttgtgtcaaacataaatgtgacttttttggctttcagccaacctagagacaagtattttactttat 40150282  T
Q  183 caaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 238  Q
    | |  | |||| | | |||||||| || |||||||||  | |||||||||||||||    
T  40150283 ccagaagcctgagaataggagtaatagcattattaaacaacctattgttacgttca 40150338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 195
Target Start/End: Complemental strand, 10563838 - 10563744
Alignment:
Q  101 cttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgtcaaacaacctggg 195  Q
    ||||| ||||||||||  ||||||||| |||||   |||||| | |||||||||||  |||||||||||||||| ||||| || |||||||||||    
T  10563838 cttgagcaccaactatctgtaccaaacctaaaaacaactttttttgctttcaaccaggctaaagacaaatatttaactttatctaacaacctggg 10563744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 23657237 - 23657298
Alignment:
Q  54 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaacta 115  Q
    ||||||||||||||||||   |||||||||| | ||||||||| ||| ||||||||||||||    
T  23657237 gtacaacaacaaaaccaagctagccaatacctagacattgtaacgggtttgaccaccaacta 23657298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 18935261 - 18935373
Alignment:
Q  83 cccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgt 182  Q
    ||||||||||| || || ||||| ||||||||||  ||||||||| |||||   || ||| | |||||||||||  ||||||||  |||||| ||||| |    
T  18935261 cccaaacattgaaagggacttgaacaccaactatctgtaccaaacctaaaaacaacatttttggctttcaaccaggctaaagacttatatttaactttat 18935360  T
Q  183 caaacaacctggg 195  Q
    | |||||||||||    
T  18935361 ctaacaacctggg 18935373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 53779674 - 53779750
Alignment:
Q  119 gtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgtcaaacaacctggg 195  Q
    ||||||||| |||||   |||||| | |||||||||||  |||||||||||||||| ||||| || |||||||||||    
T  53779674 gtaccaaacctaaaaacaacttttttggctttcaaccaggctaaagacaaatatttaactttatctaacaacctggg 53779750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 3861224 - 3861274
Alignment:
Q  139 ttttctagctttcaaccaacctaaagacaaatattttactttgtcaaacaa 189  Q
    |||| ||||||||| ||| ||||||||||||||||||||||| || |||||    
T  3861224 ttttttagctttcatccagcctaaagacaaatattttactttatccaacaa 3861274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 3869981 - 3870031
Alignment:
Q  139 ttttctagctttcaaccaacctaaagacaaatattttactttgtcaaacaa 189  Q
    |||| ||||||||| ||| ||||||||||||||||||||||| || |||||    
T  3869981 ttttttagctttcatccagcctaaagacaaatattttactttatccaacaa 3870031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 195
Target Start/End: Complemental strand, 29213509 - 29213416
Alignment:
Q  101 cttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgtcaaacaacctggg 195  Q
    ||||| ||||| ||||  ||||||||| ||||| | |||||| | ||||||||| |  |||||||||||||||| ||||| || |||||||||||    
T  29213509 cttgagcaccacctatctgtaccaaacctaaaaca-acttttttggctttcaactaggctaaagacaaatatttaactttatctaacaacctggg 29213416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 42777894 - 42777943
Alignment:
Q  146 gctttcaaccaacctaaagacaaatattttactttgtcaaacaacctggg 195  Q
    |||||||||||  ||||||||| |||||| |||||||| |||||||||||    
T  42777894 gctttcaaccaggctaaagacatatatttgactttgtctaacaacctggg 42777943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 195
Target Start/End: Complemental strand, 12881232 - 12881120
Alignment:
Q  83 cccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgt 182  Q
    ||||| ||||| || || ||||| ||||| ||||  | ||||||| |||||   |||||| | |||||||||||  ||||||||| |||||| ||||| |    
T  12881232 cccaagcattggaagggacttgagcaccacctatctgaaccaaacctaaaaacaacttttttggctttcaaccaggctaaagacatatatttaactttat 12881133  T
Q  183 caaacaacctggg 195  Q
    | |||||||||||    
T  12881132 ctaacaacctggg 12881120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 131; Significance: 5e-68; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 11575322 - 11575085
Alignment:
Q  1 agcacaaggcgtgcctcgaaaactcgtcaagaaa-caccaaaatgtagaagtcggtacaacaacaaaaccaactcagccaatacccaaacattgtaaagg 99  Q
    ||||||| ||||||||| || ||||||||| ||| |||||||| ||||||||| |||||||||| | ||||||| |||||||||||||||||||||||||    
T  11575322 agcacaaagcgtgcctcaaatactcgtcaacaaaacaccaaaaagtagaagtcagtacaacaacgacaccaactaagccaatacccaaacattgtaaagg 11575223  T
Q  100 gcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgtcaaacaacctggggaaa 199  Q
    ||||||||||||||||| ||| |||||||| ||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||  || ||||| |||    
T  11575222 gcttgaccaccaactatgagtgccaaacat-aaatagacttttctagctttcaaccaatctaaggacaaatattttactttgtcaagtaatctgggcaaa 11575124  T
Q  200 ggagtaacagaattattaaaacatctattgttacgttca 238  Q
     |||| |||  |||||||||||| |||||||||||||||    
T  11575123 cgagtcacatgattattaaaacacctattgttacgttca 11575085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 55 - 238
Target Start/End: Complemental strand, 22095825 - 22095642
Alignment:
Q  55 tacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaac 154  Q
    |||| |||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||  |||||| || ||   |||||||||||||||||    
T  22095825 tacaccaacaaaaccaaattagccaatacccagacattgtaaagggcttgaccaccaactattagtgtcaaacaaaagagtagcttttctagctttcaac 22095726  T
Q  155 caacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 238  Q
    ||||||||||||||||||||||||||||| | ||||||||  |||||| ||| ||||||||| ||||| |||||||||||||||    
T  22095725 caacctaaagacaaatattttactttgtcgagcaacctggacaaaggaataatagaattattgaaacacctattgttacgttca 22095642  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 5415622 - 5415537
Alignment:
Q  153 accaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 238  Q
    ||||||||||| |||||||||||||||| |||| ||||||||| |||||||||| ||||| ||| |||||  ||||||||||||||    
T  5415622 accaacctaaacacaaatattttactttatcaagcaacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttca 5415537  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 238
Target Start/End: Complemental strand, 3727950 - 3727766
Alignment:
Q  54 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 153  Q
    |||||||||||||| | | | ||||||| | || |||  | |||||| |||||||||| |||| |||||||||   ||| | | |||| |||||||||||    
T  3727950 gtacaacaacaaaaaccaattagccaatgctcatacaaagaaaagggtttgaccaccacctatcagtaccaaaaggaaaggtggctttactagctttcaa 3727851  T
Q  154 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 238  Q
    ||| |||||  |||| |||||||||||||| | ||||||  | | |||||||| || |||||| ||  | |||||||||||||||    
T  3727850 ccatcctaacaacaagtattttactttgtccatcaacctaagcataggagtaatagcattattgaataacctattgttacgttca 3727766  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 5415718 - 5415650
Alignment:
Q  59 acaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaac 127  Q
    |||||||||| || | |||||||||||||||||||||| ||| ||||||||||||||  ||| ||||||    
T  5415718 acaacaaaacaaagttagccaatacccaaacattgtaacgggtttgaccaccaactaaaagtgccaaac 5415650  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 40089995 - 40090044
Alignment:
Q  146 gctttcaaccaacctaaagacaaatattttactttgtcaaacaacctggg 195  Q
    |||||||||||| ||||||||| |||||| ||||| || |||||||||||    
T  40089995 gctttcaaccaagctaaagacatatatttgactttatctaacaacctggg 40090044  T

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Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 13909139 - 13909268
Alignment:
Q  1 agcacaaggcgtgcctcgaaaactcgtcaagaaacaccaaaatgtagaagtcggtacaacaacaaaaccaactcagccaatacccaaacattgtaaaggg 100  Q
    ||||||||||||||||| || |||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13909139 agcacaaggcgtgcctcaaagactcatcaagaaacaccgaaatgtagaagtcagtacaacaacaaaaccaactcagccaatacccaaacattgtaaaggg 13909238  T
Q  101 cttgaccaccaactattagtaccaaacata 130  Q
    ||||||||||||||||||||||||||||||    
T  13909239 cttgaccaccaactattagtaccaaacata 13909268  T

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Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 54 - 238
Target Start/End: Complemental strand, 4988641 - 4988457
Alignment:
Q  54 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 153  Q
    |||||| ||||||| ||| | |||||||||||||||||||||| ||| ||||||||||||||  |||  |||||| ||||||  | ||||||||||||||    
T  4988641 gtacaataacaaaaacaagttagccaatacccaaacattgtaacgggtttgaccaccaactaaaagtgtcaaacaaaaaagaagcgtttctagctttcaa 4988542  T
Q  154 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 238  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||  || |||||  ||||||||||||||    
T  4988541 ccaacctaaagacaaatattttactttgtcaagcaacctgggtaaaggagtaatagaatcgttgaaacacatattgttacgttca 4988457  T

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Target: chr8; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 55 - 238
Target Start/End: Complemental strand, 36319065 - 36318882
Alignment:
Q  55 tacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaac 154  Q
    ||||||| ||||||||| | |||||||||| ||||||||||||||| ||||||||||||||  | ||||||||| |||||| |||||||||||||||| |    
T  36319065 tacaacagcaaaaccaagttagccaatacctaaacattgtaaagggtttgaccaccaactaaaactaccaaacaaaaaagaaacttttctagctttcagc 36318966  T
Q  155 caacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 238  Q
    ||||||||||| |||||||||||||| |||| |||  |||| |||||||||| ||||| ||| |||||  ||||||||||||||    
T  36318965 caacctaaagataaatattttactttatcaagcaatttgggtaaaggagtaatagaatcattgaaacacatattgttacgttca 36318882  T

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Target: scaffold0108 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 56 - 238
Target Start/End: Original strand, 10475 - 10657
Alignment:
Q  56 acaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaacc 155  Q
    |||||||||||||||| | |||||||||||||||||||||| ||| || |||||||||||  ||| ||||||| ||||||  | ||||||||||||||||    
T  10475 acaacaacaaaaccaagttagccaatacccaaacattgtaacgggtttaaccaccaactaaaagtgccaaacaaaaaagaagcgtttctagctttcaacc 10574  T
Q  156 aacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 238  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| ||| |||||  ||||||||||||||    
T  10575 aacctaaagacaaatattttactttgtcaagcaacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttca 10657  T

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Target: scaffold0007 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 181722 - 181834
Alignment:
Q  83 cccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgt 182  Q
    |||||||||||||| || ||||| ||||| ||||| | ||||||| ||||    || ||| | |||||||||||  ||||||||| |||||| ||||| |    
T  181722 cccaaacattgtaagggacttgaacaccacctatttgaaccaaacctaaagaccaccttttttgctttcaaccaggctaaagacatatatttaactttat 181821  T
Q  183 caaacaacctggg 195  Q
    | |||||||||||    
T  181822 ctaacaacctggg 181834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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