View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3536_low_29 (Length: 249)

Name: NF3536_low_29
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3536_low_29
NF3536_low_29
[»] chr7 (8 HSPs)
chr7 (18-135)||(6970117-6970234)
chr7 (133-249)||(6970262-6970378)
chr7 (24-130)||(6922797-6922903)
chr7 (24-130)||(6955309-6955415)
chr7 (28-132)||(6918618-6918722)
chr7 (28-132)||(6923425-6923529)
chr7 (24-130)||(6923767-6923873)
chr7 (24-120)||(6917964-6918060)


Alignment Details
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 6970117 - 6970234
Alignment:
Q  18 agtttgaggtttaggagggccatagaaagcagacatgctcatgcaaccaagtccttgtaaggatacttccatgccttgtgatcctaacttcattcttcct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6970117 agtttgaggtttaggagggccatagaaagcagacatgctcatgcaaccaagtccttgtaaggatacttccatgccttgtgatcctaacttcattcttcct 6970216  T
Q  118 actgttgccattgttctt 135  Q
    ||||||||||||||||||    
T  6970217 actgttgccattgttctt 6970234  T

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Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 133 - 249
Target Start/End: Original strand, 6970262 - 6970378
Alignment:
Q  133 cttctatcctagtactatgtataaaggccaaacaaaattgaagttgtgaatatctccgccaccaccaggtctatttataattagctgatgtcatacaaca 232  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6970262 cttctatcctaggactatgtataaaggccaaacaaaattgaagttgtgaatatctccgccaccaccaggtctatttataattagctgatgtcatacaaca 6970361  T
Q  233 aagaaaggtcaaacttt 249  Q
    |||||||||||||||||    
T  6970362 aagaaaggtcaaacttt 6970378  T

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Target: chr7; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 24 - 130
Target Start/End: Original strand, 6922797 - 6922903
Alignment:
Q  24 aggtttaggagggccatagaaagcagacatgctcatgcaaccaagtccttgtaaggatacttccatgccttgtgatcctaacttcattcttcctactgtt 123  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  6922797 aggtttaggaggaccatagaaagcagacatgctcatgcaaccaagtccttgtaaggacacttccatcccttgtgatcctaacttcattcttcctactgtt 6922896  T
Q  124 gccattg 130  Q
    |||||||    
T  6922897 gccattg 6922903  T

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Target: chr7; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 6955415 - 6955309
Alignment:
Q  24 aggtttaggagggccatagaaagcagacatgctcatgcaaccaagtccttgtaaggatacttccatgccttgtgatcctaacttcattcttcctactgtt 123  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  6955415 aggtttaggaggaccatagaaagcagacatgctcatgcaaccaagtccttgtaaggacacttccatcccttgtgatcctaacttcattcttcctactgtt 6955316  T
Q  124 gccattg 130  Q
    |||||||    
T  6955315 gccattg 6955309  T

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Target: chr7; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 6918618 - 6918722
Alignment:
Q  28 ttaggagggccatagaaagcagacatgctcatgcaaccaagtccttgtaaggatacttccatgccttgtgatcctaacttcattcttcctactgttgcca 127  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6918618 ttaggaggaccatagaaagctgacatgctcatgcaaccaagtccttgtaaggatacttccatcccttgtgatcctaacttcattcttcctactgttgcca 6918717  T
Q  128 ttgtt 132  Q
    |||||    
T  6918718 ttgtt 6918722  T

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Target: chr7; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 6923529 - 6923425
Alignment:
Q  28 ttaggagggccatagaaagcagacatgctcatgcaaccaagtccttgtaaggatacttccatgccttgtgatcctaacttcattcttcctactgttgcca 127  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6923529 ttaggaggaccatagaaagctgacatgctcatgcaaccaagtccttgtaaggatacttccatcccttgtgatcctaacttcattcttcctactgttgcca 6923430  T
Q  128 ttgtt 132  Q
    |||||    
T  6923429 ttgtt 6923425  T

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Target: chr7; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 24 - 130
Target Start/End: Original strand, 6923767 - 6923873
Alignment:
Q  24 aggtttaggagggccatagaaagcagacatgctcatgcaaccaagtccttgtaaggatacttccatgccttgtgatcctaacttcattcttcctactgtt 123  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  6923767 aggtttaggaggaccatagaaagcagacatgctcatgcaaccaagtccttgtaaggacacttccatgccttgtgatcctaacttcattcttcctactttt 6923866  T
Q  124 gccattg 130  Q
    | |||||    
T  6923867 gtcattg 6923873  T

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Target: chr7; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 6918060 - 6917964
Alignment:
Q  24 aggtttaggagggccatagaaagcagacatgctcatgcaaccaagtccttgtaaggatacttccatgccttgtgatcctaacttcattcttcctact 120  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6918060 aggtttaggaggaccatagaaagcagacatgctcatgcaaccaagtccttgtaaggacacttccatgccttgtgatcctaacttcattcttcctact 6917964  T

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