View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3536_low_33 (Length: 244)
Name: NF3536_low_33
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3536_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 1422631 - 1422406
Alignment:
| Q |
1 |
ttgatcattctgaggttgaaagcgaagttgctgtgaatgaaaaggaagaaaatggaagtgggaaagtaatagaagatcaaaaaagtgagaacaacaatga |
100 |
Q |
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| T |
1422631 |
ttgatcattttgaggttgaaagcgaagttgctgtgaatgaaaaggaagaaaatgaaagtgggaaagtaatagaagatcaaaaaagtgagaacaacaatga |
1422532 |
T |
|
| Q |
101 |
agaggaacatggaggtgaagagaaggaagctgttgaaggaggggttagtgaagaagttgaagaagctaagattgaggtagcacaaccaaagcaacaacaa |
200 |
Q |
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| T |
1422531 |
agaggaacatggaggtgaagagaaggaagctgttgaaggaggggttagtgaagaagttgaagaagctaagattgaggtagcacaaccaaagcaacaacaa |
1422432 |
T |
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| Q |
201 |
ttagcagtaaaagggaagaatgattt |
226 |
Q |
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| T |
1422431 |
ttagcagtaaaagggaagaatgattt |
1422406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 1422865 - 1422806
Alignment:
| Q |
1 |
ttgatcattctgaggttgaaagcgaagttgctgtgaatgaaaaggaagaaaatggaagtg |
60 |
Q |
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|||||||||| |||||||||||||||||| |||| | ||||||||||||||||| ||||| |
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| T |
1422865 |
ttgatcattcggaggttgaaagcgaagtttctgtaattgaaaaggaagaaaatgaaagtg |
1422806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 1422787 - 1422735
Alignment:
| Q |
1 |
ttgatcattctgaggttgaaagcgaagttgctgtgaatgaaaaggaagaaaat |
53 |
Q |
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| T |
1422787 |
ttgatcgttccgaggttgaaagtgaagtttctgtgattgaaaaggaagaaaat |
1422735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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