View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3536_low_36 (Length: 238)
Name: NF3536_low_36
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3536_low_36 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 26554059 - 26553840
Alignment:
| Q |
18 |
aaagttcccttcattaggcaaaatggaaattcatattcaacatcacatcaaggaaacatagaagcaaatgacgagggtatcttaatctgaaattacatga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26554059 |
aaagttcccttcattaggcaaaatggaaattcatattcaacatcacatcaaggaaacatcgaagcaaatgacgagggtatcttaatctgaaattacatga |
26553960 |
T |
|
| Q |
118 |
aagaatttaacttcatgactttggtggctgtgtttattgttagctgttagattaccgttcacatctgatcatgtggccattcttgaatgcttttgagtct |
217 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26553959 |
a-gaatttaacttcatgactttggtggctgtgtttattgttagctgttagattaccgttcacatctgatcatgtggccattctagaatgcttttgagtct |
26553861 |
T |
|
| Q |
218 |
cttaaagtactctgatagact |
238 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
26553860 |
cttaaagtactctgatagact |
26553840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 36123794 - 36123762
Alignment:
| Q |
121 |
aatttaacttcatgactttggtggctgtgttta |
153 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
36123794 |
aatttaacttcatgactttggtgactgtgttta |
36123762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University