View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3536_low_37 (Length: 238)

Name: NF3536_low_37
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3536_low_37
NF3536_low_37
[»] chr2 (6 HSPs)
chr2 (9-216)||(41706931-41707138)
chr2 (9-216)||(15372900-15373107)
chr2 (74-216)||(25620046-25620188)
chr2 (41-128)||(15433243-15433329)
chr2 (100-214)||(17847838-17847952)
chr2 (66-212)||(17818445-17818591)
[»] chr7 (6 HSPs)
chr7 (8-216)||(35343805-35344013)
chr7 (9-216)||(8422797-8423004)
chr7 (91-199)||(19710429-19710536)
chr7 (9-184)||(63017-63192)
chr7 (73-200)||(45743197-45743324)
chr7 (80-200)||(15651198-15651318)
[»] chr4 (4 HSPs)
chr4 (9-216)||(44794276-44794483)
chr4 (10-215)||(10765080-10765285)
chr4 (37-211)||(26294563-26294737)
chr4 (41-203)||(35403594-35403756)
[»] chr1 (1 HSPs)
chr1 (9-215)||(47266782-47266988)
[»] chr8 (1 HSPs)
chr8 (9-216)||(31200668-31200875)
[»] chr3 (1 HSPs)
chr3 (10-215)||(41018390-41018595)
[»] chr6 (2 HSPs)
chr6 (9-216)||(2968526-2968727)
chr6 (9-175)||(4641781-4641947)
[»] chr5 (1 HSPs)
chr5 (73-200)||(27654781-27654908)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 216
Target Start/End: Complemental strand, 41707138 - 41706931
Alignment:
Q  9 tgagatgaagttccatccattatgctcataatttccaagatctttatgtagtaattccaaaaaacatttccagttatctttattctccacgtccacaatg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||    
T  41707138 tgagatgaagttccatccattatgctcataatttccaagatctttatgtagtaattccaaaaaccatttccagttatctttattctccacatccataatg 41707039  T
Q  109 gcataagcagtgacataaatctggttatttccatcttgtctcacagcagacaaaagttgtcctccataataccccttaagaaagcatccatctaacccaa 208  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41707038 gcataagcaatgacataaatctggttatttccatcttgtcccacagcagacaaaagttgccctccataataccccttaagaaagcatccatctaacccaa 41706939  T
Q  209 tcaatgga 216  Q
    ||||||||    
T  41706938 tcaatgga 41706931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 9 - 216
Target Start/End: Complemental strand, 15373107 - 15372900
Alignment:
Q  9 tgagatgaagttccatccattatgctcataatttccaagatctttatgtagtaattccaaaaaacatttccagttatctttattctccacgtccacaatg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  15373107 tgagatgaagttccatccattatgctcataatttccaagatctttatgtggtaattccaaaaaccatttccagttatctttattctccacatccacaatg 15373008  T
Q  109 gcataagcagtgacataaatctggttatttccatcttgtctcacagcagacaaaagttgtcctccataataccccttaagaaagcatccatctaacccaa 208  Q
    ||||||||| |  ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  15373007 gcataagcaatagcataaatctggttatttccatcttgtcccacagcagacaaaagttgccctccataatacccctcaagaaagcatccatctaacccaa 15372908  T
Q  209 tcaatgga 216  Q
    ||||||||    
T  15372907 tcaatgga 15372900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 25620188 - 25620046
Alignment:
Q  74 atttccagttatctttattctccacgtccacaatggcataagcagtgacataaatctggttatttccatcttgtctcacagcagacaaaagttgtcctcc 173  Q
    |||| ||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| || | ||||||||||||| |||||    
T  25620188 attttcagttatctttgttctccacatccacaatggcataagcaatgacataaatctggttatttccatcttgtcccaaatcagacaaaagttgccctcc 25620089  T
Q  174 ataataccccttaagaaagcatccatctaacccaatcaatgga 216  Q
    ||   ||||||||||||||||||||||||||||||||||||||    
T  25620088 attccaccccttaagaaagcatccatctaacccaatcaatgga 25620046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 15433329 - 15433243
Alignment:
Q  41 ttccaagatctttatgtagtaattccaaaaaacatttccagttatctttattctccacgtccacaatggcataagcagtgacataaat 128  Q
    ||||||||| |||||| ||||||| |||||  ||||||| || ||||||||||||||  |||||||||||||||||| ||||||||||    
T  15433329 ttccaagatttttatgcagtaatttcaaaac-catttcctgtcatctttattctccatatccacaatggcataagcaatgacataaat 15433243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 214
Target Start/End: Complemental strand, 17847952 - 17847838
Alignment:
Q  100 tccacaatggcataagcagtgacataaatctggttatttccatcttgtctcacagcagacaaaagttgtcctccataataccccttaagaaagcatccat 199  Q
    |||||||||||||||||||||||| || |    |||||| ||||||||| |||| |||||||  |||  |||||| || | || || |||||||||||||    
T  17847952 tccacaatggcataagcagtgacaaaattgcaattattttcatcttgtcccacaacagacaattgtttccctccaaaacatcctttgagaaagcatccat 17847853  T
Q  200 ctaacccaatcaatg 214  Q
    ||||  |||||||||    
T  17847852 ctaaatcaatcaatg 17847838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 212
Target Start/End: Original strand, 17818445 - 17818591
Alignment:
Q  66 caaaaaacatttccagttatctttattctccacgtccacaatggcataagcagtgacataaatctggttatttccatcttgtctcacagcagacaaaagt 165  Q
    |||||| || ||||| |||||  |||| || || ||||||||||||||| || ||||| || |    |||||||||||||||  |||| ||||||| |||    
T  17818445 caaaaaccacttccaattatccctattttctacatccacaatggcataaacaatgacaaaattgcatttatttccatcttgtaccacatcagacaatagt 17818544  T
Q  166 tgtcctccataataccccttaagaaagcatccatctaacccaatcaa 212  Q
    |  | |||| |||| || || ||||| ||||||||||| ||||||||    
T  17818545 ttccttccaaaatatcctttcagaaaacatccatctaaaccaatcaa 17818591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 35343805 - 35344013
Alignment:
Q  8 gtgagatgaagttccatccattatgctcataatttccaagatctttatgtagtaattccaaaaaacatttccagttatctttattctccacgtccacaat 107  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||    
T  35343805 gtgagatgaagttccatccattatgcttataattttcaagatctttatgtagtaattccaaaaaccattttcagttatctttattctccacatccacaat 35343904  T
Q  108 ggcataagcagtgacataaatctggttatttccatcttgtctcacagcagacaaaagttgtcctccataataccccttaagaaagcatccatctaaccca 207  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35343905 ggcataagcaatgacataaatctggttatttccatcttgtcccacagcagacaaaagttgtcctccataataccccttaagaaagcatccatctaaccca 35344004  T
Q  208 atcaatgga 216  Q
    |||||||||    
T  35344005 atcaatgga 35344013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 9 - 216
Target Start/End: Original strand, 8422797 - 8423004
Alignment:
Q  9 tgagatgaagttccatccattatgctcataatttccaagatctttatgtagtaattccaaaaaacatttccagttatctttattctccacgtccacaatg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||    
T  8422797 tgagatgaagttccatccattatgctcataatttccaagatctttatgtagtaattccaaaaaccatttacagttatctttattctccacatccacaatg 8422896  T
Q  109 gcataagcagtgacataaatctggttatttccatcttgtctcacagcagacaaaagttgtcctccataataccccttaagaaagcatccatctaacccaa 208  Q
    ||||||||| ||||||||||||||||||||||||||| || ||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  8422897 gcataagcaatgacataaatctggttatttccatcttatcccacagcaaacaaaagttgccctccataatactccttaagaaagcatccatctaacccaa 8422996  T
Q  209 tcaatgga 216  Q
    ||||||||    
T  8422997 tcaatgga 8423004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 199
Target Start/End: Original strand, 19710429 - 19710536
Alignment:
Q  91 ttctccacgtccacaatggcataagcagtgacataaatctggttatttccatcttgtctcacagcagacaaaagttgtcctccataataccccttaagaa 190  Q
    |||||||| || |||||| |||||||| || || ||||||| |||||| ||| ||||| |||| || |||| | || |||||||||||||||||| ||||    
T  19710429 ttctccacatcaacaatgacataagcaatggca-aaatctgattatttacatattgtcccacaacaaacaacaattttcctccataataccccttcagaa 19710527  T
Q  191 agcatccat 199  Q
    |||||||||    
T  19710528 agcatccat 19710536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 184
Target Start/End: Complemental strand, 63192 - 63017
Alignment:
Q  9 tgagatgaagttccatccattatgctcataatttccaagatctttatgtagtaattccaaaaaacatttccagttatctttattctccacgtccacaatg 108  Q
    |||||| ||||||||||||||| || |||||||||||| ||||  ||| |||| ||||||||| || ||| |||| || || |||||||  || ||||||    
T  63192 tgagataaagttccatccattacgcacataatttccaatatctgcatggagtagttccaaaaaccacttctagttgtccttgttctccatatcaacaatg 63093  T
Q  109 gcataagcagtgacataaatctggttatttccatcttgtctcacagcagacaaaagttgtcctccataatacccct 184  Q
     |||||||| ||| | | |  || ||||| |||||||| |  ||| ||||||| | ||| |||| |||||||||||    
T  63092 acataagcaatgataaacaaatgattattaccatcttgccctacaacagacaacaattgccctctataatacccct 63017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 45743197 - 45743324
Alignment:
Q  73 catttccagttatctttattctccacgtccacaatggcataagcagtgacataaatctggttatttccatcttgtctcacagcagacaaaagttgtcctc 172  Q
    |||||||| |||||||| || || |  |||||||| ||||||||| | |||||||| || |||||| ||||||| |  ||||||||||| | ||| || |    
T  45743197 catttccaattatctttgttttcaatatccacaattgcataagcaatcacataaatatgattatttgcatcttggccaacagcagacaacaattgaccac 45743296  T
Q  173 cataataccccttaagaaagcatccatc 200  Q
    ||||||| || || | ||||||||||||    
T  45743297 cataataaccttttaaaaagcatccatc 45743324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 200
Target Start/End: Complemental strand, 15651318 - 15651198
Alignment:
Q  80 agttatctttattctccacgtccacaatggcataagcagtgacataaatctggttatttccatcttgtctcacagcagacaaaagttgtcctccataata 179  Q
    |||||||||| || || || |||||||| ||||||||| | |||||||| || |||||| ||||||| |  ||| ||||||| | ||| || ||||||||    
T  15651318 agttatctttgttttcaacatccacaattgcataagcaatcacataaatatgattatttgcatcttggccaacatcagacaacaattgaccaccataata 15651219  T
Q  180 ccccttaagaaagcatccatc 200  Q
     || || | ||||||||||||    
T  15651218 accttttaaaaagcatccatc 15651198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 9 - 216
Target Start/End: Original strand, 44794276 - 44794483
Alignment:
Q  9 tgagatgaagttccatccattatgctcataatttccaagatctttatgtagtaattccaaaaaacatttccagttatctttattctccacgtccacaatg 108  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||    
T  44794276 tgagatgaagttccatccattatgctcataatttccaagatgtttatgtagtaattccaaaaaccatttccagttatctttattctccacatccacagtg 44794375  T
Q  109 gcataagcagtgacataaatctggttatttccatcttgtctcacagcagacaaaagttgtcctccataataccccttaagaaagcatccatctaacccaa 208  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44794376 gcataagcaatgacataaatctggttatttccatcttgtcccacagcagacaaaagttgccctccataataccccttaagaaagcatccatctaacccaa 44794475  T
Q  209 tcaatgga 216  Q
    ||||||||    
T  44794476 tcaatgga 44794483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 10765285 - 10765080
Alignment:
Q  10 gagatgaagttccatccattatgctcataatttccaagatctttatgtagtaattccaaaaaacatttccagttatctttattctccacgtccacaatgg 109  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  10765285 gagatgaagttccatccattacgctcataatctccaagatctttatgtaataattccaaaaaccatttccagttatctttattctccacatccacaatgg 10765186  T
Q  110 cataagcagtgacataaatctggttatttccatcttgtctcacagcagacaaaagttgtcctccataataccccttaagaaagcatccatctaacccaat 209  Q
    |||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  10765185 cataagcaatgacataaatatggttatttccatcttgtcccacagcagacaaaagttgccctccataataccccttaagaaaacatccatctaacccaat 10765086  T
Q  210 caatgg 215  Q
    ||||||    
T  10765085 caatgg 10765080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 37 - 211
Target Start/End: Original strand, 26294563 - 26294737
Alignment:
Q  37 taatttccaagatctttatgtagtaattccaaaaaacatttccagttatctttattctccacgtccacaatggcataagcagtgacataaatctggttat 136  Q
    ||||| ||||||| |  ||| |||||||||||||| || |||||||||||||| |||||||| || ||||||||||| ||| ||||| |||| || ||||    
T  26294563 taattaccaagatttgcatggagtaattccaaaaaccacttccagttatctttgttctccacatcaacaatggcatacgcaatgacaaaaatatgattat 26294662  T
Q  137 ttccatcttgtctcacagcagacaaaagttgtcctccataataccccttaagaaagcatccatctaacccaatca 211  Q
    || ||||||||| |||| |||| |||||||| |||||||||||||| || | ||||||| ||||||  |||||||    
T  26294663 ttgcatcttgtcccacaacagataaaagttgccctccataatacccattcataaagcattcatctagtccaatca 26294737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 203
Target Start/End: Original strand, 35403594 - 35403756
Alignment:
Q  41 ttccaagatctttatgtagtaattccaaaaaacatttccagttatctttattctccacgtccacaatggcataagcagtgacataaatctggttatttcc 140  Q
    |||||||||||  ||| |||| ||||||||| || |||||||| || || |||||||| || ||||||||||||||| ||| | | || || ||||| ||    
T  35403594 ttccaagatctgcatggagtagttccaaaaaccacttccagttgtccttgttctccacatcaacaatggcataagcaatgataaagatatgattattacc 35403693  T
Q  141 atcttgtctcacagcagacaaaagttgtcctccataataccccttaagaaagcatccatctaa 203  Q
    ||||||||  ||| ||||||| | ||  ||| ||||||||||||| |  ||||||||||||||    
T  35403694 atcttgtcctacatcagacaacaatttcccttcataataccccttcaagaagcatccatctaa 35403756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 9 - 215
Target Start/End: Original strand, 47266782 - 47266988
Alignment:
Q  9 tgagatgaagttccatccattatgctcataatttccaagatctttatgtagtaattccaaaaaacatttccagttatctttattctccacgtccacaatg 108  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||    
T  47266782 tgagatgaagttccatccattacgctcataatctccaagatctttatgtaataattccaaaaaccatttccagttatctttattctccacatccacaatg 47266881  T
Q  109 gcataagcagtgacataaatctggttatttccatcttgtctcacagcagacaaaagttgtcctccataataccccttaagaaagcatccatctaacccaa 208  Q
    ||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  47266882 gcataagcaatgacataaatatggttatttccatcttgtcccacagcagacaaaagttgccctccataataccccttaagaaagcatccatctaacccaa 47266981  T
Q  209 tcaatgg 215  Q
    |||||||    
T  47266982 tcaatgg 47266988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 9 - 216
Target Start/End: Original strand, 31200668 - 31200875
Alignment:
Q  9 tgagatgaagttccatccattatgctcataatttccaagatctttatgtagtaattccaaaaaacatttccagttatctttattctccacgtccacaatg 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||  |||||||||    
T  31200668 tgagatgaagttccatccattatgctcataatttccaagatctttatgtagtaatttcaaaaaccatttccagttatctttattctccatatccacaatg 31200767  T
Q  109 gcataagcagtgacataaatctggttatttccatcttgtctcacagcagacaaaagttgtcctccataataccccttaagaaagcatccatctaacccaa 208  Q
    ||||||||| ||||||||||||||||||||| |||||||| |||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  31200768 gcataagcaatgacataaatctggttatttcaatcttgtcccacaacagacaaaagttgccctccataataccctttaagaaagcatccatctaacccaa 31200867  T
Q  209 tcaatgga 216  Q
    ||||||||    
T  31200868 tcaatgga 31200875  T

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Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 10 - 215
Target Start/End: Original strand, 41018390 - 41018595
Alignment:
Q  10 gagatgaagttccatccattatgctcataatttccaagatctttatgtagtaattccaaaaaacatttccagttatctttattctccacgtccacaatgg 109  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  41018390 gagatgaagttccatccattacgctcataatctccaagatctttatgtaataattccaaaaaccatttccagttatctttattctccacatccacaatgg 41018489  T
Q  110 cataagcagtgacataaatctggttatttccatcttgtctcacagcagacaaaagttgtcctccataataccccttaagaaagcatccatctaacccaat 209  Q
    |||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  41018490 cataagcaatgacataaatatggttatttccatcttgtcccacagcagacaaaagttgccctccataataccccttaagaaaacatccatctaacccaat 41018589  T
Q  210 caatgg 215  Q
    ||||||    
T  41018590 caatgg 41018595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 9 - 216
Target Start/End: Complemental strand, 2968727 - 2968526
Alignment:
Q  9 tgagatgaagttccatccattatgctcataatttccaagatctttatgtagtaattccaaaaaacatttccagttatctttattctccacgtccacaatg 108  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||      ||||    
T  2968727 tgagatgaaattccatccattatgctcataatttccaagatctttatgtagtaattccaaaaaccatttccagttatctttattctccac------aatg 2968634  T
Q  109 gcataagcagtgacataaatctggttatttccatcttgtctcacagcagacaaaagttgtcctccataataccccttaagaaagcatccatctaacccaa 208  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  2968633 gcataagcaatgacataaatctggttatttccatcttgtcccacagcagacaaaagttgcccttcataataccccttaagaaagcatccatctaacccaa 2968534  T
Q  209 tcaatgga 216  Q
    ||||||||    
T  2968533 tcaatgga 2968526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 4641947 - 4641781
Alignment:
Q  9 tgagatgaagttccatccattatgctcataatttccaagatctttatgtagtaattccaaaaaacatttccagttatctttattctccacgtccacaatg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||    
T  4641947 tgagatgaagttccatccattatgctcataatttccaagatctttatgtagtaattccaaaaaccatttacagttatctttattctccacatccacaatg 4641848  T
Q  109 gcataagcagtgacataaatctggttatttccatcttgtctcacagcagacaaaagttgtcctccat 175  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  4641847 gcataagcaatgacataaatctggttatttccatcttgtcccacagcagacaaaagttgccctccat 4641781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 27654908 - 27654781
Alignment:
Q  73 catttccagttatctttattctccacgtccacaatggcataagcagtgacataaatctggttatttccatcttgtctcacagcagacaaaagttgtcctc 172  Q
    ||||||||||||||||| || || |  |||||||| ||||||||| | |||||||| || |||||| ||||||| |  ||||||||||| | ||| || |    
T  27654908 catttccagttatctttgttttcaatatccacaattgcataagcaatcacataaatatgattatttgcatcttggccaacagcagacaacaattgaccac 27654809  T
Q  173 cataataccccttaagaaagcatccatc 200  Q
    ||||||| || || | ||||||||||||    
T  27654808 cataataaccttttaaaaagcatccatc 27654781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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