View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3536_low_4 (Length: 542)
Name: NF3536_low_4
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3536_low_4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 12 - 542
Target Start/End: Complemental strand, 14728397 - 14727877
Alignment:
| Q |
12 |
gaaaagaaaaaggcatgcatcttctcaagaaaagtagctacaatttttaagcctaatacacagaatcttaccaaggaatctagatttatgagcattaaca |
111 |
Q |
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| T |
14728397 |
gaaaagaaaaaggcatgcatcttctcaagaaaagtagctacaatttttaagcctaatacacagaatcttaccaaggaatctagatttatgagcattaaca |
14728298 |
T |
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| Q |
112 |
gtccctatggaaaaagttcctacaatatgtttggaaaaataaatggaaaaccccatatattgttcaccgttcagcagtaatgatgtgaactgtagcctca |
211 |
Q |
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| T |
14728297 |
gtccctatggaaaaagttcctacaatatgtttggaaaaataaatggaaaaccccatatattgttcaccgttcagcagtaatgatgtgagctgtagcctca |
14728198 |
T |
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| Q |
212 |
taggagtaaaggaaaaaaggaaggtagaaatagcatgacattcagataaatataaatccacaatatccattttttatttattactttccaatattctcca |
311 |
Q |
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| T |
14728197 |
taggagtaaaggaaaaaaggaaggtagaaatagcatgacattcagataaatataaatccacaatatccattttttatttat----------tattttcca |
14728108 |
T |
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| Q |
312 |
atctataatttgcataactaccaagcaataaggtaccggaaattttatattgtaatgaaagatcagaggttatcaagacatcaaatgattaccaaattgg |
411 |
Q |
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| T |
14728107 |
atctataatttgcataactaccaagcaacaaggtaccggaaattttatattgtaatgaaagatcagagtttatcaagacatcaaatgattaccaaattgg |
14728008 |
T |
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| Q |
412 |
gacacttgagacaaaaggtcagacttcacttcagtgaaacttggcagtagaatggtaatcaattgactatgtaattattgaaaatgttgggagaatgtac |
511 |
Q |
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| T |
14728007 |
gacacttgagacaaaaggtcagacttcatttcagtgaaacttggcagtagaatggtaattaattgactatgtaattattgaaaatgttgggagaatgtac |
14727908 |
T |
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| Q |
512 |
ttaaaaaggcacatgattcaatggagagaac |
542 |
Q |
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| T |
14727907 |
ttaaaaaggcacatgattcaatggagagaac |
14727877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 13955471 - 13955611
Alignment:
| Q |
20 |
aaaggcatgcatcttctcaagaaaagtagctacaatttttaagcctaatacacagaatcttaccaaggaatctagatttatgagcat-taacagtcccta |
118 |
Q |
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|||| |||| |||||||||||||||| ||||| | |||||| ||||||||||| |||||||| |||||||||| ||||||||||| |||| |||||| |
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| T |
13955471 |
aaagacatgaatcttctcaagaaaagcagctatgaattttaatcctaatacacaaaatcttacaaaggaatctacttttatgagcatctaacgatcccta |
13955570 |
T |
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| Q |
119 |
tggaaaaagttcctacaatatgtttggaaaaataaatggaaa |
160 |
Q |
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| T |
13955571 |
tggaaaaagttcat-caatatgttctgaaaattaaatggaaa |
13955611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 540
Target Start/End: Complemental strand, 370077 - 370020
Alignment:
| Q |
483 |
taattattgaaaatgttgggagaatgtacttaaaaaggcacatgattcaatggagaga |
540 |
Q |
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| T |
370077 |
taattattgaaattgtcaggggaatgtgcttaaaaatgcacatgattcaatggagaga |
370020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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