View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3536_low_41 (Length: 235)
Name: NF3536_low_41
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3536_low_41 |
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| [»] scaffold0281 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 28680857 - 28680656
Alignment:
| Q |
16 |
aatatcatatctttgaatgaagaagggaaattgtgtgtcacttttttattacaagttagtttctttttacaaattcttatgattaccgttcttatcatta |
115 |
Q |
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| T |
28680857 |
aatatcatatctttgaatgaagaagggaaattgtgtgtcacttttttattccaagttagtttctttttacaaattcttatgattattgttcttatcatta |
28680758 |
T |
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| Q |
116 |
tctttgcatgatttatgcaataagattcaagtatcaaggttcaactttctttttatatctcaaaatggagaaccactccaagcaggagtcacaagggagt |
215 |
Q |
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| T |
28680757 |
tctttgcatgaattatgcattaagattcaagtatcagggttcaattttctttttatatctcaaaatggagaaccacgccaagcatgagtcacaagggagt |
28680658 |
T |
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| Q |
216 |
tt |
217 |
Q |
| |
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|| |
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| T |
28680657 |
tt |
28680656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 31860691 - 31860892
Alignment:
| Q |
16 |
aatatcatatctttgaatgaagaagggaaattgtgtgtcacttttttattacaagttagtttctttttacaaattcttatgattaccgttcttatcatta |
115 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
31860691 |
aatattatatctttgaatgaagaagggaaattgtgtgtcacttttttattccaagttagtttctttttacaaattcttatgattattgttcttaccatta |
31860790 |
T |
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| Q |
116 |
tctttgcatgatttatgcaataagattcaagtatcaaggttcaactttctttttatatctcaaaatggagaaccactccaagcaggagtcacaagggagt |
215 |
Q |
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||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
31860791 |
tctttgcatgatttatgcaataaaattcaagtatcagggttcaactttctttttatatctcaaaatggagaaccacaccaagcagaagtcacaagggagt |
31860890 |
T |
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| Q |
216 |
tt |
217 |
Q |
| |
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|| |
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| T |
31860891 |
tt |
31860892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0281 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold0281
Description:
Target: scaffold0281; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 10174 - 10375
Alignment:
| Q |
16 |
aatatcatatctttgaatgaagaagggaaattgtgtgtcacttttttattacaagttagtttctttttacaaattcttatgattaccgttcttatcatta |
115 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
10174 |
aatattatatatttgaatgaagaagggaaattgtgtgtcacttttttattccaagttagtttctttttacaaattcttatgattattgttcttaccatta |
10273 |
T |
|
| Q |
116 |
tctttgcatgatttatgcaataagattcaagtatcaaggttcaactttctttttatatctcaaaatggagaaccactccaagcaggagtcacaagggagt |
215 |
Q |
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||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
10274 |
tctttgcatgatttatgcaataaaattcaagtatcagggttcaactttctttttatatctcaaaatggagaaccaaaccaagcagaagtcacaagggagt |
10373 |
T |
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| Q |
216 |
tt |
217 |
Q |
| |
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|| |
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|
| T |
10374 |
tt |
10375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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