View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3536_low_44 (Length: 224)
Name: NF3536_low_44
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3536_low_44 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 10255587 - 10255794
Alignment:
| Q |
1 |
ctagtgatgagtcgaagatgaaatggtttgatgtgccagggtttaatattatgcacgcgataaacgcatgggatggggaagatgatgaggaaactgtgac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10255587 |
ctagtgatgagtcgaagatgaaatggtttgatgtgccagggtttaatattatgcacgcgataaactcatgggatggggaagatgatgaggaaactgtgac |
10255686 |
T |
|
| Q |
101 |
actaattgctccgaatgttctctccattgagcatacgatggagagacttgagctagttcatgcaatgattgagaaggtaaagataaatattaaaactggg |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10255687 |
actaattgctccaaatgttctctccattgagcatacgatggagagacttgagctagttcatgcaatgattgagaaggtaaagataaatattaaaactggg |
10255786 |
T |
|
| Q |
201 |
attgtatc |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
10255787 |
attgtatc |
10255794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 10239010 - 10238847
Alignment:
| Q |
9 |
gagtcgaagatgaaatggtttgatgtgccagggtttaatattatgcacgcgataaacgcatgggatggggaagatgatgaggaaactgtgacactaattg |
108 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||| ||||||||||||| ||||||||||||||||| |||||||| | |||| |||||| || ||| |
|
|
| T |
10239010 |
gagtcgaagatgaagtggtttgatgttcctgggcttaatattatgcatttgataaacgcatgggatgaggaagatgg---gaaaacagtgacaatagttg |
10238914 |
T |
|
| Q |
109 |
ctccgaatgttctctccattgagcatacgatggagagacttgagctagttcatgcaatgattgagaa |
175 |
Q |
| |
|
| |||||| |||||| | | ||||||| |||||||||| | ||||| |||||| |||||||||||| |
|
|
| T |
10238913 |
caccgaatattctctgcgtggagcatatgatggagagattggagcttattcatgaaatgattgagaa |
10238847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 10230230 - 10230155
Alignment:
| Q |
9 |
gagtcgaagatgaaatggtttgatgtgccagggtttaatattatgcacgcgataaacgcatgggatggggaagatg |
84 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
10230230 |
gagtccaagatgaagtggtttgatgttccagggtttaatattatgcatacgataaacgcatgggatgaggaagatg |
10230155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University