View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3536_low_46 (Length: 211)
Name: NF3536_low_46
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3536_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 57 - 181
Target Start/End: Original strand, 2126792 - 2126916
Alignment:
| Q |
57 |
caagttccagcatattcttcattccacatagtcctatggtactctaaggtttggaattgtaacccttccaagcaagagatccgtgacacttgacacgctc |
156 |
Q |
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| T |
2126792 |
caagttccagcatattcttcattccacatagtcctgtggtactctaaggtttggaattgtaacccttccaagcaagagatccgtgacacttgacacgctc |
2126891 |
T |
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| Q |
157 |
ccaaaaacagcaatcagcttgacta |
181 |
Q |
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| T |
2126892 |
ccaaaaacagcaatcagcttcacta |
2126916 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 4913925 - 4914016
Alignment:
| Q |
3 |
ttgtcaagttgctaaggcaatgatgaaaatgaccactcattgtata---gctgaggtcaagttccagcatattcttcattccacatagtcct |
91 |
Q |
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| T |
4913925 |
ttgtcaagtttctaaggcattgaggaaaataaccactcattccatttctgctgaggtcaagttcctgcagattcttcattccacataatcct |
4914016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 32746934 - 32747020
Alignment:
| Q |
1 |
gtttgtcaagttgctaaggcaatgatgaaaatgaccactcattgtat---agctgaggtcaagttccagcatattcttcattccaca |
84 |
Q |
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| T |
32746934 |
gtttgtcaagttgctaaggcaatgtggaaaatcaccactcattctatttctgctgaggtcaagttcctgtaaattcttcatttcaca |
32747020 |
T |
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