View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3536_low_6 (Length: 500)

Name: NF3536_low_6
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3536_low_6
NF3536_low_6
[»] chr8 (12 HSPs)
chr8 (16-233)||(3324926-3325135)
chr8 (60-206)||(3262597-3262734)
chr8 (82-218)||(3314939-3315067)
chr8 (83-194)||(3391529-3391632)
chr8 (77-194)||(3364274-3364383)
chr8 (79-218)||(31175928-31176059)
chr8 (75-196)||(3286500-3286613)
chr8 (76-132)||(7164638-7164694)
chr8 (93-132)||(3407326-3407365)
chr8 (79-218)||(3398509-3398640)
chr8 (144-196)||(3267244-3267296)
chr8 (170-228)||(3375149-3375207)
[»] chr2 (1 HSPs)
chr2 (145-228)||(14766994-14767077)
[»] chr5 (5 HSPs)
chr5 (80-218)||(20838713-20838843)
chr5 (93-218)||(20812358-20812475)
chr5 (78-228)||(12599040-12599182)
chr5 (77-194)||(15803016-15803125)
chr5 (93-132)||(8877768-8877807)
[»] chr7 (2 HSPs)
chr7 (142-230)||(8371703-8371791)
chr7 (93-137)||(36213712-36213756)
[»] chr6 (8 HSPs)
chr6 (93-137)||(5370725-5370769)
chr6 (93-132)||(5157511-5157550)
chr6 (93-132)||(5354497-5354536)
chr6 (93-132)||(31059813-31059852)
chr6 (93-126)||(5690042-5690075)
chr6 (93-137)||(5102497-5102541)
chr6 (93-133)||(5243796-5243836)
chr6 (93-133)||(5345019-5345059)
[»] chr3 (6 HSPs)
chr3 (93-194)||(6905809-6905902)
chr3 (93-132)||(47986755-47986794)
chr3 (93-132)||(47996042-47996081)
chr3 (93-132)||(48005329-48005368)
chr3 (93-132)||(48014614-48014653)
chr3 (142-188)||(32411127-32411173)
[»] chr4 (4 HSPs)
chr4 (93-132)||(4320502-4320541)
chr4 (93-132)||(4344805-4344844)
chr4 (93-132)||(4361236-4361275)
chr4 (94-132)||(6532116-6532154)
[»] scaffold0468 (1 HSPs)
scaffold0468 (83-194)||(6139-6242)


Alignment Details
Target: chr8 (Bit Score: 153; Significance: 7e-81; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 3324926 - 3325135
Alignment:
Q  16 gttagtagttacatccaaggaaactagtgacaatgaacttcgctcaaatggggatataaagggtagggaattcatgcttggtgacatccaagaccaaatg 115  Q
    ||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3324926 gttagtagttaaatccaaggaaactggtgacaatgaatttcgctcaaatggggatatacagggtagggaattcatgcttggtgacatccaagaccaaatg 3325025  T
Q  116 atagaaggaaaaacatcgtgtgtgagtgtgataatccttcgtatccacatagggatatatatccaatgctttttaatcttagtatagaataaggaacttg 215  Q
    |||||||||||||||||        |||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3325026 atagaaggaaaaacatc--------gtgtgatagtccttcatatccacagagggatatatatccaatgctttttaatcttagtattgaataaggaacttg 3325117  T
Q  216 ttttacagatgtaccttt 233  Q
    ||||||||||||| ||||    
T  3325118 ttttacagatgtatcttt 3325135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 60 - 206
Target Start/End: Original strand, 3262597 - 3262734
Alignment:
Q  60 caaatggggatataaagggtagggaattcatgcttggtgacatccaagaccaaatgatagaaggaaaaacatcgtgtgtgagtgtgataatccttcgtat 159  Q
    |||||||||| |||  |||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||          |||| ||||| || |||    
T  3262597 caaatggggaaatacggggtagagaattcatggttggtgacatccaagaccaaatgatagagggaaaaacatc--------acgtgaaaatcc-tcatat 3262687  T
Q  160 ccacatagggatatatatccaatgctttttaatcttagtatagaata 206  Q
    |||||||||||||||||||||||||||||| |||||| ||| |||||    
T  3262688 ccacatagggatatatatccaatgctttttgatcttactattgaata 3262734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 82 - 218
Target Start/End: Complemental strand, 3315067 - 3314939
Alignment:
Q  82 ggaattcatgcttggtgacatccaagaccaaatgatagaaggaaaaacatcgtgtgtgagtgtgataatccttcgtatccacatagggatatatatccaa 181  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||          ||||||| ||||| ||| |||||||||||||||||||||    
T  3315067 ggaattcatgtttggtgacatccaagaccaaatgatagaaggaaaaacatc--------acgtgataaaccttcatattcacatagggatatatatccaa 3314976  T
Q  182 tgctttttaatcttagtatagaataaggaacttgttt 218  Q
    || ||||| || | |  || ||| |||||||||||||    
T  3314975 tgttttttgatttaacaatcgaaaaaggaacttgttt 3314939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 3391529 - 3391632
Alignment:
Q  83 gaattcatgcttggtgacatccaagaccaaatgatagaaggaaaaacatcgtgtgtgagtgtgataatccttcgtatccacatagggatatatatccaat 182  Q
    ||||||||  |||||||||||||||||| ||||| ||||||||||||||       || |||||||||||||| ||||||||||| ||||||||||||||    
T  3391529 gaattcattgttggtgacatccaagacctaatgagagaaggaaaaacat-------ga-tgtgataatccttcatatccacatagagatatatatccaat 3391620  T
Q  183 gctttttaatct 194  Q
    ||||||| ||||    
T  3391621 gctttttgatct 3391632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 3364383 - 3364274
Alignment:
Q  77 ggtagggaattcatgcttggtgacatccaagaccaaatgatagaaggaaaaacatcgtgtgtgagtgtgataatccttcgtatccacatagggatatata 176  Q
    |||| |||||||||  ||||||| |||||||||| ||||| ||||||||||||||       || |||||||||||||| ||||||||||| ||||||||    
T  3364383 ggtaaggaattcattgttggtgatatccaagacctaatgagagaaggaaaaacat-------ga-tgtgataatccttcatatccacatagagatatata 3364292  T
Q  177 tccaatgctttttaatct 194  Q
    ||||||||||||| ||||    
T  3364291 tccaatgctttttgatct 3364274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 79 - 218
Target Start/End: Complemental strand, 31176059 - 31175928
Alignment:
Q  79 tagggaattcatgcttggtgacatccaagaccaaatgatagaaggaaaaacatcgtgtgtgagtgtgataatccttcgtatccacatagggatatatatc 178  Q
    ||||||||| ||| |||||||||||||||||||||||| |||||||||||| ||   ||        |||||||||| ||||||||||| |||||||||     
T  31176059 tagggaatttatggttggtgacatccaagaccaaatgagagaaggaaaaacgtcacatg--------ataatccttcatatccacatagagatatatatg 31175968  T
Q  179 caatgctttttaatcttagtatagaataaggaacttgttt 218  Q
    ||||||||||| |||||  ||| ||||| || ||||||||    
T  31175967 caatgctttttgatcttgctattgaatagggcacttgttt 31175928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 75 - 196
Target Start/End: Original strand, 3286500 - 3286613
Alignment:
Q  75 agggtagggaattcatgcttggtgacatccaagaccaaatgatagaaggaaaaacatcgtgtgtgagtgtgataatccttcgtatccacatagggatata 174  Q
    ||||||| |||||||   |||||||||||||||||| ||||| |||  |||||||||| ||||        |||||||||| ||||||||||||||||||    
T  3286500 agggtagagaattcagtgttggtgacatccaagacctaatgagagattgaaaaacatcatgtg--------ataatccttcatatccacatagggatata 3286591  T
Q  175 tatccaatgctttttaatctta 196  Q
    ||||  ||||||||| ||||||    
T  3286592 tatctgatgctttttgatctta 3286613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 7164638 - 7164694
Alignment:
Q  76 gggtagggaattcatgcttggtgacatccaagaccaaatgatagaaggaaaaacatc 132  Q
    |||||||||||||| | |||||||||||||||||||||| | |||||||||||||||    
T  7164638 gggtagggaattcaaggttggtgacatccaagaccaaataagagaaggaaaaacatc 7164694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 132
Target Start/End: Original strand, 3407326 - 3407365
Alignment:
Q  93 ttggtgacatccaagaccaaatgatagaaggaaaaacatc 132  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3407326 ttggtgacatccaagaccaaatgatagaaggaaaaacatc 3407365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 218
Target Start/End: Original strand, 3398509 - 3398640
Alignment:
Q  79 tagggaattcatgcttggtgacatccaagaccaaatgatagaaggaaaaacatcgtgtgtgagtgtgataatccttcgtatccacatagggatatatatc 178  Q
    |||||||||  || ||||||||||||| |||||||||| |||||||||||||||       ||   ||||||||||  ||||||||||| |||||||||     
T  3398509 tagggaatttctggttggtgacatccatgaccaaatgagagaaggaaaaacatc-------ag-acgataatcctttatatccacatagagatatatatg 3398600  T
Q  179 caatgctttttaatcttagtatagaataaggaacttgttt 218  Q
    ||||||||||| |||| |  || ||| |||||||||||||    
T  3398601 caatgctttttgatctaacaatcgaaaaaggaacttgttt 3398640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 3267244 - 3267296
Alignment:
Q  144 tgataatccttcgtatccacatagggatatatatccaatgctttttaatctta 196  Q
    |||||||||||| ||||||||||| ||||||||||| |||||||| |||||||    
T  3267244 tgataatccttcatatccacatagagatatatatccgatgcttttcaatctta 3267296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 3375207 - 3375149
Alignment:
Q  170 atatatatccaatgctttttaatcttagtatagaataaggaacttgttttacagatgta 228  Q
    ||||||||||||||||||| | |||||||||  |||| ||||||| ||||| |||||||    
T  3375207 atatatatccaatgcttttcagtcttagtattcaatagggaacttcttttatagatgta 3375149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 14766994 - 14767077
Alignment:
Q  145 gataatccttcgtatccacatagggatatatatccaatgctttttaatcttagtatagaataaggaacttgttttacagatgta 228  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| |||||||    
T  14766994 gataatccttcataaccacatagggatatatatccaatgctttttaatcttagtattgaatatggaacttcttttatagatgta 14767077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 80 - 218
Target Start/End: Complemental strand, 20838843 - 20838713
Alignment:
Q  80 agggaattcatgcttggtgacatccaagaccaaatgatagaaggaaaaacatcgtgtgtgagtgtgataatccttcgtatccacatagggatatatatcc 179  Q
    ||||||||  || |||||||||||||||||||||||| ||||||||||||||| ||||        |||||||||| ||||||||||| |||||||||||    
T  20838843 agggaatttctggttggtgacatccaagaccaaatgagagaaggaaaaacatcatgtg--------ataatccttcatatccacatagtgatatatatcc 20838752  T
Q  180 aatgctttttaatcttagtatagaataaggaacttgttt 218  Q
    |||||||||| |||||  ||| ||||| || ||||||||    
T  20838751 aatgctttttgatcttgctattgaatagggcacttgttt 20838713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 20812475 - 20812358
Alignment:
Q  93 ttggtgacatccaagaccaaatgatagaaggaaaaacatcgtgtgtgagtgtgataatccttcgtatccacatagggatatatatccaatgctttttaat 192  Q
    |||||||||||||||||||||||| |||||||||||||||  |||        |||||||||||||||||||||| ||||||||| ||||||||||| ||    
T  20812475 ttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtg--------ataatccttcgtatccacatagtgatatatatgcaatgctttttgat 20812384  T
Q  193 cttagtatagaataaggaacttgttt 218  Q
    |||  ||| ||||| || ||||||||    
T  20812383 cttgctattgaatagggcacttgttt 20812358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 228
Target Start/End: Original strand, 12599040 - 12599182
Alignment:
Q  78 gtagggaattcatgcttggtgacatccaagaccaaatgatagaaggaaaaacatcgtgtgtgagtgtgataatccttcgtatccacatagggatatatat 177  Q
    |||||||||| | | |||||||||||||||||||| ||| |||||||||||||||  |||        |||||||||| |||||||| | ||||||||||    
T  12599040 gtagggaatttacggttggtgacatccaagaccaattgagagaaggaaaaacatcacgtg--------ataatccttcatatccacacaaggatatatat 12599131  T
Q  178 ccaatgctttttaatcttagtatagaataaggaacttgttttacagatgta 228  Q
    ||||||||||| | ||||||||| ||||  | ||||| ||||| |||||||    
T  12599132 ccaatgcttttcagtcttagtattgaatgggaaacttcttttatagatgta 12599182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 15803125 - 15803016
Alignment:
Q  77 ggtagggaattcatgcttggtgacatccaagaccaaatgatagaaggaaaaacatcgtgtgtgagtgtgataatccttcgtatccacatagggatatata 176  Q
    |||| |||||||||   |||||| |||||||||| ||||| ||||||||||||||| ||||        |||||||||  ||||||||||| ||||||||    
T  15803125 ggtaaggaattcattgctggtgatatccaagacctaatgagagaaggaaaaacatcatgtg--------ataatcctttatatccacatagagatatata 15803034  T
Q  177 tccaatgctttttaatct 194  Q
    ||||||||||||| ||||    
T  15803033 tccaatgctttttgatct 15803016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 132
Target Start/End: Complemental strand, 8877807 - 8877768
Alignment:
Q  93 ttggtgacatccaagaccaaatgatagaaggaaaaacatc 132  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  8877807 ttggtgacatccaagaccaaatgatagatggaaacacatc 8877768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 8371703 - 8371791
Alignment:
Q  142 tgtgataatccttcgtatccacatagggatatatatccaatgctttttaatcttagtatagaataaggaacttgttttacagatgtacc 230  Q
    |||||||||||||| || ||||||| |||||||||| |||| ||| ||||||||||||| ||||| ||||||| ||||| |||||||||    
T  8371703 tgtgataatccttcataaccacatatggatatatatacaatacttcttaatcttagtattgaatagggaacttcttttatagatgtacc 8371791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 36213712 - 36213756
Alignment:
Q  93 ttggtgacatccaagaccaaatgatagaaggaaaaacatcgtgtg 137  Q
    |||||||||||||||||||||||||||| ||||| ||||| ||||    
T  36213712 ttggtgacatccaagaccaaatgatagatggaaacacatcatgtg 36213756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 5370769 - 5370725
Alignment:
Q  93 ttggtgacatccaagaccaaatgatagaaggaaaaacatcgtgtg 137  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||    
T  5370769 ttggtgacatccaagaccaaatgatagatggaaaaacatcatgtg 5370725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 132
Target Start/End: Original strand, 5157511 - 5157550
Alignment:
Q  93 ttggtgacatccaagaccaaatgatagaaggaaaaacatc 132  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  5157511 ttggtgacatccaagaccaaatgatagatggaaacacatc 5157550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 132
Target Start/End: Original strand, 5354497 - 5354536
Alignment:
Q  93 ttggtgacatccaagaccaaatgatagaaggaaaaacatc 132  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  5354497 ttggtgacatccaagaccaaatgatagatggaaacacatc 5354536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 132
Target Start/End: Original strand, 31059813 - 31059852
Alignment:
Q  93 ttggtgacatccaagaccaaatgatagaaggaaaaacatc 132  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  31059813 ttggtgacatcaaagaccaaatgagagaaggaaaaacatc 31059852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 126
Target Start/End: Original strand, 5690042 - 5690075
Alignment:
Q  93 ttggtgacatccaagaccaaatgatagaaggaaa 126  Q
    |||||||||||||||||||||||||||| |||||    
T  5690042 ttggtgacatccaagaccaaatgatagatggaaa 5690075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 5102497 - 5102541
Alignment:
Q  93 ttggtgacatccaagaccaaatgatagaaggaaaaacatcgtgtg 137  Q
    ||||||||||||||||||| |||||||| ||||| ||||| ||||    
T  5102497 ttggtgacatccaagaccagatgatagatggaaacacatcatgtg 5102541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 5243796 - 5243836
Alignment:
Q  93 ttggtgacatccaagaccaaatgatagaaggaaaaacatcg 133  Q
    ||||||||||||||||||| |||||||| ||||| ||||||    
T  5243796 ttggtgacatccaagaccagatgatagatggaaatacatcg 5243836  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 5345059 - 5345019
Alignment:
Q  93 ttggtgacatccaagaccaaatgatagaaggaaaaacatcg 133  Q
    ||||||||||||||||||| |||||||| ||||| ||||||    
T  5345059 ttggtgacatccaagaccagatgatagatggaaatacatcg 5345019  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 6905809 - 6905902
Alignment:
Q  93 ttggtgacatccaagaccaaatgatagaaggaaaaacatcgtgtgtgagtgtgataatccttcgtatccacatagggatatatatccaatgctttttaat 192  Q
    |||||||||||||||||||||||| ||||||||||| |||          ||||||||||||| ||||| ||||||||||||||  ||||||||||| ||    
T  6905809 ttggtgacatccaagaccaaatgagagaaggaaaaatatc--------acgtgataatccttcatatccgcatagggatatatacacaatgctttttgat 6905900  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 132
Target Start/End: Original strand, 47986755 - 47986794
Alignment:
Q  93 ttggtgacatccaagaccaaatgatagaaggaaaaacatc 132  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  47986755 ttggtgacatccaagaccaaatgatagatggaaacacatc 47986794  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 132
Target Start/End: Original strand, 47996042 - 47996081
Alignment:
Q  93 ttggtgacatccaagaccaaatgatagaaggaaaaacatc 132  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  47996042 ttggtgacatccaagaccaaatgatagatggaaacacatc 47996081  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 132
Target Start/End: Original strand, 48005329 - 48005368
Alignment:
Q  93 ttggtgacatccaagaccaaatgatagaaggaaaaacatc 132  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  48005329 ttggtgacatccaagaccaaatgatagatggaaacacatc 48005368  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 132
Target Start/End: Original strand, 48014614 - 48014653
Alignment:
Q  93 ttggtgacatccaagaccaaatgatagaaggaaaaacatc 132  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  48014614 ttggtgacatccaagaccaaatgatagatggaaacacatc 48014653  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 32411127 - 32411173
Alignment:
Q  142 tgtgataatccttcgtatccacatagggatatatatccaatgctttt 188  Q
    |||||||||||||| ||||||||||| ||||||||| | ||||||||    
T  32411127 tgtgataatccttcatatccacatagagatatatatgcgatgctttt 32411173  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 93 - 132
Target Start/End: Original strand, 4320502 - 4320541
Alignment:
Q  93 ttggtgacatccaagaccaaatgatagaaggaaaaacatc 132  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  4320502 ttggtgacatccaagaccaaatgatagaaggaaacacatc 4320541  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 93 - 132
Target Start/End: Complemental strand, 4344844 - 4344805
Alignment:
Q  93 ttggtgacatccaagaccaaatgatagaaggaaaaacatc 132  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  4344844 ttggtgacatccaagaccaaatgatagaaggaaacacatc 4344805  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 132
Target Start/End: Complemental strand, 4361275 - 4361236
Alignment:
Q  93 ttggtgacatccaagaccaaatgatagaaggaaaaacatc 132  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  4361275 ttggtgacatccaagacgaaatgatagaaggaaacacatc 4361236  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 6532116 - 6532154
Alignment:
Q  94 tggtgacatccaagaccaaatgatagaaggaaaaacatc 132  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  6532116 tggtgacatccaagaccgaatgatagaaggaaatacatc 6532154  T

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Target: scaffold0468 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 6139 - 6242
Alignment:
Q  83 gaattcatgcttggtgacatccaagaccaaatgatagaaggaaaaacatcgtgtgtgagtgtgataatccttcgtatccacatagggatatatatccaat 182  Q
    ||||||||  |||||||||||||||||||||| |  ||||||||||||||  |||        |||||||||| ||||| ||||||||||||||  ||||    
T  6139 gaattcattgttggtgacatccaagaccaaataagggaaggaaaaacatcacgtg--------ataatccttcatatccgcatagggatatatacacaat 6230  T
Q  183 gctttttaatct 194  Q
    ||||||| ||||    
T  6231 gctttttgatct 6242  T

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