View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3536_low_9 (Length: 417)
Name: NF3536_low_9
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3536_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 51 - 409
Target Start/End: Complemental strand, 10255068 - 10254710
Alignment:
| Q |
51 |
ataagcgagttgaaaccagaaaacacgtttgggagaatttggtaaccagcttcgttttcgattttgtatttgtaagtttgaacgtaacggctacagagtg |
150 |
Q |
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| T |
10255068 |
ataagcgagttgaaaccagaaaacacgtttgggataagttggtaaccagcttcgttttcgattttgtatttgtaagtttgaacgtaacggctacagagtg |
10254969 |
T |
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| Q |
151 |
tagcttttccgtttgagattgtaatggcgtgaagcatgccgtcaccgtcgaagaggtggtagggtccacgtggaaggaactgtgggtttggtccgtttct |
250 |
Q |
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| T |
10254968 |
tagcttttccgtttgagattgtaatggcgtgaagcatgccatcaccgtcgaagaggtggtagggtccacgtggaaggaactgtgggtttggtccgtttct |
10254869 |
T |
|
| Q |
251 |
tatgtaagcaccgttaagtgacggcgggagtgtacctttgatgatttgacattgtgttggagggagttcgtcaaggactggtgcaaagttttgggacaaa |
350 |
Q |
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| T |
10254868 |
tatgtaaacaccgttaagtgacggtggaagtgtgcctttaatgactttgcattgtgttggagggagttcgtcaaggactggtgcaaagttttgggacaaa |
10254769 |
T |
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| Q |
351 |
acatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgatgatgtc |
409 |
Q |
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| T |
10254768 |
acatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgatgatgtc |
10254710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 409
Target Start/End: Original strand, 10239505 - 10239895
Alignment:
| Q |
19 |
ctacagccacggatccacgtgccgctaaaccaataagcgagttgaaaccagaaaacacgtttgggagaatttggtaaccagcttcgttttcgattttgta |
118 |
Q |
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| T |
10239505 |
ctacagccacggatccacgtgccgctaaaccaataagcgagttgaaaccagaaaacacgtttgggagaatttggtaaccagcttcgttttcgattttgta |
10239604 |
T |
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| Q |
119 |
tttgtaagtttgaacgtaacggctacagagtgtagcttttccgtttgagattgtaatggcgtgaagcatgccgtcaccgtcgaagaggtggtagggtcca |
218 |
Q |
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| T |
10239605 |
tttataggtttgaacgtaacggctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatgccgtcaccgtcaaagagatggtaaggtcca |
10239704 |
T |
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| Q |
219 |
cgtggaaggaactgtgggtttggtccgtttcttatgtaagcaccgttaagtgacggcgggagtgtacctttgatgatttgacattgtgttggagggagtt |
318 |
Q |
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| T |
10239705 |
cgtggaaggaactgagggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatgactttgcattgtgttggagggagtt |
10239804 |
T |
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| Q |
319 |
cgtcaaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgatgatgtc |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10239805 |
cgtcaaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgatgatgtc |
10239895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 409
Target Start/End: Original strand, 10230725 - 10231115
Alignment:
| Q |
19 |
ctacagccacggatccacgtgccgctaaaccaataagcgagttgaaaccagaaaacacgtttgggagaatttggtaaccagcttcgttttcgattttgta |
118 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||||| |||||||| |
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| T |
10230725 |
ctacaaccacggatccacgtgccgctaaagcaataagcgagttgaaaccagaaaacacgtttgggataagttggtgaccagctttgttttcaattttgta |
10230824 |
T |
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| Q |
119 |
tttgtaagtttgaacgtaacggctacagagtgtagcttttccgtttgagattgtaatggcgtgaagcatgccgtcaccgtcgaagaggtggtagggtcca |
218 |
Q |
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| T |
10230825 |
cttgtaggtttttacataacggctacatagtgtggctttcccgtttgagattgtaatggcatgaagcatgccgtcaccgtcaaagagatggtagggtcca |
10230924 |
T |
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| Q |
219 |
cgtggaaggaactgtgggtttggtccgtttcttatgtaagcaccgttaagtgacggcgggagtgtacctttgatgatttgacattgtgttggagggagtt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10230925 |
cgtggaaggaactgtgggtttggtccgtttcttatgtaagcaccgtaaagtgacggcgggagtgtacctttgatgattacacattgtgttggagggagtt |
10231024 |
T |
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| Q |
319 |
cgtcaaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgatgatgtc |
409 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10231025 |
cgtctaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgataatgtc |
10231115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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