View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_high_17 (Length: 409)
Name: NF3537_high_17
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 399
Target Start/End: Original strand, 4560011 - 4560391
Alignment:
| Q |
19 |
tctatgtgttggttcaatgaataaccctgaccctttatttcttgtttggttaatgttttcacatataaccctttagcttctctatgcattgaatctttga |
118 |
Q |
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| T |
4560011 |
tctatgtgttggttcaatgaataaccatgaccctttatttcttgtttggttaatgttttcacatataactctttagcttctctatgcattgaatctttga |
4560110 |
T |
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| Q |
119 |
caatatcaaataaatcaactgatacttttgaatgtggatttcttgaaatttgaatttgtttggttgacaatgattctgtcttaattattccgttaaattc |
218 |
Q |
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| T |
4560111 |
caatatcaaagaaatcaactgatacttttgaatgtggatttcttgaaatttgaatttgtttggttgacaatgattctgtcttaattattccgttaaattc |
4560210 |
T |
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| Q |
219 |
ataggatgtcatgctagatgaacaagatgatgaagagacagaagttactgatgattctgtggagaattgttgcttctcttttgcaatcttttgattcttt |
318 |
Q |
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| T |
4560211 |
ataggatgtcatgctagatgaacaagatgatgaagagacagaagttactgatgattctgtggagaattgttgcttctcttttgcaatcttttgattcttt |
4560310 |
T |
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| Q |
319 |
tcctgcattcataatcatatgttattaatggtttttgccaacatttttcaaagagtaaaactatagttatctttacctttg |
399 |
Q |
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| T |
4560311 |
tcctgcattcataatcatatgttattaatggtttttgccaacatttttcaaatagtaaaactatagttatctttacctttg |
4560391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 331
Target Start/End: Original strand, 5025723 - 5025835
Alignment:
| Q |
222 |
ggatgtcatgctagatgaacaagatgatgaagagacagaagttactgat---gattctgtggagaattgttgcttctcttttgcaatcttttgattcttt |
318 |
Q |
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||||| |||||||||||||||||| || ||||| | |||||| ||||| |||||||||||| ||||||| |||||| ||| || ||| ||||||| |
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| T |
5025723 |
ggatgacatgctagatgaacaagacgacgaagacatggaagttcctgatgatgattctgtggaggattgttgattctctcttggaaccttcacattcttt |
5025822 |
T |
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| Q |
319 |
tcctgcattcata |
331 |
Q |
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|||||| ||||| |
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| T |
5025823 |
gcctgcaatcata |
5025835 |
T |
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