View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_high_20 (Length: 389)
Name: NF3537_high_20
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 7 - 371
Target Start/End: Original strand, 53185931 - 53186295
Alignment:
| Q |
7 |
ggagcagagatgtatattacagggttttgcaccaaattgaatcatgaactctaaaccctatcttccacaatgagcgaccgtgaccgccaccgcgacagag |
106 |
Q |
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| T |
53185931 |
ggagcaaagatgtatattacagggttttgcaccaaattgaatcatgaactctaaaccctatcttccacaatgagcgaccgtgaccgccaccgcgacagag |
53186030 |
T |
|
| Q |
107 |
aaagagatcgaagacgagacaaagacgaccgcgaccgtgacgtcgatcgtgatcgcaaccgtgatcgtgacagagcacgcagcaagagatcccgtacacg |
206 |
Q |
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| T |
53186031 |
aaagagatcgaagacgagacaaagacgaccgcgaccgtgacgtcgatcgtgatcgcaaccgtgatcgcgacagagcacgcagcaagagatcccgtacacg |
53186130 |
T |
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| Q |
207 |
ttcaccggaccgtgtacgctctcgtcactctcgctcccgttctcccgtcgatcgctctcaccgtcgacgccaccaccgaacaccttctccagatcctcct |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53186131 |
ttcaccggaccgtgtacgctctcgtcactctcgctcccgttctcccgtcgatcgttctcaccgtcgacgccaccaccgaacaccttctccagatcctcct |
53186230 |
T |
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| Q |
307 |
agaaagcgtcaccggcgtgactccgtcgatgacgagccgaaagaacacaaggagacaaagaaagt |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
53186231 |
agaaagcgtcaccggcgtgactccgtcgatgacgagccgaaagaacacaaagagacgaagaaagt |
53186295 |
T |
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