View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_high_21 (Length: 381)
Name: NF3537_high_21
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_high_21 |
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| [»] scaffold1640 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 24 - 371
Target Start/End: Complemental strand, 31980168 - 31979827
Alignment:
| Q |
24 |
agaacaaccagaagatcatcacagccacaacaaccttcaagaatttttcagtgtcaatattgtcaccgaaaattctacacttctcaagctcttggtggtc |
123 |
Q |
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| T |
31980168 |
agaacaaccagaagatcatcacagccacaacaaccttcaagaatttttcagtgtcaatattgtcaccgaaaattctacacttctcaagctcttggtggtc |
31980069 |
T |
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| Q |
124 |
accaaaatgctcacaaacaagaaagagctgctgctagatcaaaaaccatcaacctcaacaccac------caccaacaacgttgttcctttttcaccacc |
217 |
Q |
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| T |
31980068 |
accaaaatgctcacaaacaagaaagagctgctgctagatcaaaaaccatcaacctcaacaccaccaacaacaacaacaacgttgttcctttttcaccacc |
31979969 |
T |
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| Q |
218 |
accacagtcatatgtttctgaacaacatgaacaaggtggtttctttcatcatcatcaacatcattacccttattggcaacaaatggaacctatacagttt |
317 |
Q |
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| T |
31979968 |
accacagtcatatgtttctgaacaacatgaacaaggtggtttcttt------------catcattacccttattggcaacaaatggaacctatacagttt |
31979881 |
T |
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| Q |
318 |
caaacaccacaacaacatcatgttgaagcagcaacaaacacttttcatcctatg |
371 |
Q |
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| T |
31979880 |
caaacaccacaacaacatcatgttgaagcagcaacaaacacttttcatcctatg |
31979827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 136
Target Start/End: Complemental strand, 25769354 - 25769311
Alignment:
| Q |
93 |
aaattctacacttctcaagctcttggtggtcaccaaaatgctca |
136 |
Q |
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| T |
25769354 |
aaattctccacttctcaagctcttggaggtcaccaaaatgctca |
25769311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 136
Target Start/End: Complemental strand, 25774935 - 25774892
Alignment:
| Q |
93 |
aaattctacacttctcaagctcttggtggtcaccaaaatgctca |
136 |
Q |
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| T |
25774935 |
aaattctccacttctcaagctcttggaggtcaccaaaatgctca |
25774892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 33781929 - 33781999
Alignment:
| Q |
87 |
caccgaaaattctacacttctcaagctcttggtggtcaccaaaatgctcacaaacaagaaagagctgctgc |
157 |
Q |
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| T |
33781929 |
caccgcaagttctactcttctcaagctcttggtggccaccagaacgcacacaagctagagagagctgctgc |
33781999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1640 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1640
Description:
Target: scaffold1640; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 542 - 585
Alignment:
| Q |
93 |
aaattctacacttctcaagctcttggtggtcaccaaaatgctca |
136 |
Q |
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| T |
542 |
aaattctccacttctcaagctcttggaggtcaccaaaatgctca |
585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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