View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_high_23 (Length: 369)
Name: NF3537_high_23
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_high_23 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 16 - 369
Target Start/End: Complemental strand, 14305023 - 14304670
Alignment:
| Q |
16 |
tccctctccttcctataattccctccacggctactcccctcggtataataataagtactcgaatacgaatttgcaaactgtcgactaccacttccagtac |
115 |
Q |
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| T |
14305023 |
tccctctccttcctataattccctccacggctactcccctcagtataataataagtactcgaatacgaatttgcaaactgtcgactaccacttccagtac |
14304924 |
T |
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| Q |
116 |
cagacctatccgtcgtcttcttacctaactccttattaacctgaaaaatagaatgaatactcgtctgctcatccacagccgtatcaaatgacaaaagtgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14304923 |
cagacctatccgtcgtcttcttacctaactccttattaacctgaaaaatagaatgaatactcgtctgctcatccacagccgtatcaaacgacaaaagtgt |
14304824 |
T |
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| Q |
216 |
aacaagcggtctaatcgcattctccctcgcgaaatcctcttgagcaacaggatcatgtttagccatcctagcaaccaaattagccgctagcgtttgaacc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14304823 |
aacaagcggtctaatcgcattctccctcgcgaaatcctcttgagcaacaggatcatgtttagccatcctagcaaccaaattagccgctagcgtttgaacc |
14304724 |
T |
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| Q |
316 |
ctaatcggcgaatcagcaagaacctgaacaacagcaggtacaccaacttcattc |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14304723 |
ctaatcggcgaatcagcaagaacctgaacaacagcaggtacaccaacttcattc |
14304670 |
T |
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