View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3537_high_25 (Length: 345)

Name: NF3537_high_25
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3537_high_25
NF3537_high_25
[»] chr7 (4 HSPs)
chr7 (22-340)||(36348911-36349236)
chr7 (224-340)||(36360175-36360288)
chr7 (62-139)||(36360452-36360529)
chr7 (155-184)||(26253172-26253201)
[»] chr2 (3 HSPs)
chr2 (156-188)||(13027830-13027862)
chr2 (154-187)||(25084200-25084233)
chr2 (155-183)||(14958692-14958720)
[»] chr4 (2 HSPs)
chr4 (155-194)||(33975331-33975370)
chr4 (155-187)||(39767019-39767051)
[»] chr1 (2 HSPs)
chr1 (96-143)||(21186489-21186536)
chr1 (155-187)||(46917274-46917306)
[»] chr8 (1 HSPs)
chr8 (155-187)||(42309905-42309937)
[»] chr6 (1 HSPs)
chr6 (155-187)||(18153709-18153741)
[»] chr3 (3 HSPs)
chr3 (155-195)||(20915875-20915915)
chr3 (155-195)||(20924837-20924877)
chr3 (155-183)||(35317635-35317663)


Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 22 - 340
Target Start/End: Complemental strand, 36349236 - 36348911
Alignment:
Q  22 tatcatccaagaatttgatcaagcaaaacacatgtggcctttcaagttcacttcaaatttttaatgtcagtgattatggagctaaaggggatggtaaaac 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36349236 tatcatccaagaatttgatcaagcaaaacacatgtggcctttcaagttcacttcaaatttttaatgtcagtgattatggagctaaaggggatggtaaaac 36349137  T
Q  122 tgatgacacgcaggtatatataacacactcatcatttatagggaccaaaaacatatttaattcaaatcataatatactcatttgttcccatgcgggatac 221  Q
    ||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36349136 tgatgacacacaggtatatataatacactcatcatttatagagaccaaaaacatatttaattcaaatcataatatactcatctgttcccatgcgggatac 36349037  T
Q  222 a----caatattcaggcattcgagaagacttgggaagcagtatgttcttc---aggaggggaagcagtttttgttgcacctcaagataatatttatctac 314  Q
    |     ||||||||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  36349036 ataattaatattcaggcattcgagaaggcttgggaagcagtatgttcttcaggaggaggggaagcagtttttgttgcacctcaagataatatttatctac 36348937  T
Q  315 tcaaaccaatcagattctctgctcct 340  Q
    ||||||||||||||||||||| ||||    
T  36348936 tcaaaccaatcagattctctggtcct 36348911  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 224 - 340
Target Start/End: Complemental strand, 36360288 - 36360175
Alignment:
Q  224 aatattcaggcattcgagaagacttgggaagcagtatgttcttcaggaggggaagcagtttttgttgcacctcaagataatatttatctactcaaaccaa 323  Q
    ||||||||||||||| ||||| ||||||||| ||||||||| |||||   | || ||||||| || |||||||||||| ||| |||||||||||||||||    
T  36360288 aatattcaggcattcaagaaggcttgggaagtagtatgttcgtcagg---gcaatcagttttagtggcacctcaagattataattatctactcaaaccaa 36360192  T
Q  324 tcagattctctgctcct 340  Q
    |||||||||||| ||||    
T  36360191 tcagattctctggtcct 36360175  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 36360529 - 36360452
Alignment:
Q  62 ttcaagttcacttcaaatttttaatgtcagtgattatggagctaaaggggatggtaaaactgatgacacgcaggtata 139  Q
    |||| |||||||| ||||| ||||||| || |||||||||||||||||||||||| | || |||||||| ||||||||    
T  36360529 ttcacgttcacttaaaattgttaatgttagagattatggagctaaaggggatggtcatacggatgacacacaggtata 36360452  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 184
Target Start/End: Complemental strand, 26253201 - 26253172
Alignment:
Q  155 atttatagggaccaaaaacatatttaattc 184  Q
    ||||||||||||||||||||||||||||||    
T  26253201 atttatagggaccaaaaacatatttaattc 26253172  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 188
Target Start/End: Original strand, 13027830 - 13027862
Alignment:
Q  156 tttatagggaccaaaaacatatttaattcaaat 188  Q
    |||||||||||||||||||||||||||||||||    
T  13027830 tttatagggaccaaaaacatatttaattcaaat 13027862  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 25084200 - 25084233
Alignment:
Q  154 catttatagggaccaaaaacatatttaattcaaa 187  Q
    |||||||||||||||||||||||||||| |||||    
T  25084200 catttatagggaccaaaaacatatttaactcaaa 25084233  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 183
Target Start/End: Original strand, 14958692 - 14958720
Alignment:
Q  155 atttatagggaccaaaaacatatttaatt 183  Q
    |||||||||||||||||||||||||||||    
T  14958692 atttatagggaccaaaaacatatttaatt 14958720  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 33975331 - 33975370
Alignment:
Q  155 atttatagggaccaaaaacatatttaattcaaatcataat 194  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  33975331 atttatagggaccaaaaacatatttaacccaaatcataat 33975370  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 39767019 - 39767051
Alignment:
Q  155 atttatagggaccaaaaacatatttaattcaaa 187  Q
    ||||||||||||||||||||||||||| |||||    
T  39767019 atttatagggaccaaaaacatatttaactcaaa 39767051  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 143
Target Start/End: Complemental strand, 21186536 - 21186489
Alignment:
Q  96 tatggagctaaaggggatggtaaaactgatgacacgcaggtatatata 143  Q
    ||||||||| |||| ||||||||||||||||||||  |||||||||||    
T  21186536 tatggagctcaaggagatggtaaaactgatgacacaaaggtatatata 21186489  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 46917306 - 46917274
Alignment:
Q  155 atttatagggaccaaaaacatatttaattcaaa 187  Q
    ||||||||||||||||||||||||||| |||||    
T  46917306 atttatagggaccaaaaacatatttaactcaaa 46917274  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 42309905 - 42309937
Alignment:
Q  155 atttatagggaccaaaaacatatttaattcaaa 187  Q
    |||||||||||||||||||||||||||| ||||    
T  42309905 atttatagggaccaaaaacatatttaatccaaa 42309937  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 18153741 - 18153709
Alignment:
Q  155 atttatagggaccaaaaacatatttaattcaaa 187  Q
    ||||||||||||||||||||||||||| |||||    
T  18153741 atttatagggaccaaaaacatatttaactcaaa 18153709  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 20915875 - 20915915
Alignment:
Q  155 atttatagggaccaaaaacatatttaattcaaatcataata 195  Q
    |||||||||||||||||||||||||||  ||||| ||||||    
T  20915875 atttatagggaccaaaaacatatttaacccaaataataata 20915915  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 20924837 - 20924877
Alignment:
Q  155 atttatagggaccaaaaacatatttaattcaaatcataata 195  Q
    |||||||||||||||||||||||||||  ||||| ||||||    
T  20924837 atttatagggaccaaaaacatatttaacccaaataataata 20924877  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 183
Target Start/End: Original strand, 35317635 - 35317663
Alignment:
Q  155 atttatagggaccaaaaacatatttaatt 183  Q
    |||||||||||||||||||||||||||||    
T  35317635 atttatagggaccaaaaacatatttaatt 35317663  T

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