View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_high_27 (Length: 331)
Name: NF3537_high_27
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_high_27 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 331
Target Start/End: Complemental strand, 8538030 - 8537716
Alignment:
| Q |
17 |
agtaggttgatgaactattacaattcttacttgttaatttatgtggattttgaatctacgtgtatctttactttagacacatttaattgcaataaatcca |
116 |
Q |
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| T |
8538030 |
agtaggttgataaactattgcaattcttacttgttaatttctgtggattttgaatctacgtgtatctttactttagacacatttaattgcaataaatcca |
8537931 |
T |
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| Q |
117 |
ttgtgccaaattttcttctcagagtgatattgacttttgttcaatatttttgagttttctgtctgatgttctaattcatccttcgtgtattatgacggct |
216 |
Q |
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| T |
8537930 |
ttgtgccaaattttcttctcagagtgatattgacttttgttcaatatttttgtgttttctgtctgatgttctaattcatccttcgtgtattatgacggct |
8537831 |
T |
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| Q |
217 |
aatacattaaagnnnnnnngttagaaattttatgagaagttgtagcatagcaacaagaattgaacttgatgaattttaacaaccttttggtccaggttgg |
316 |
Q |
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| T |
8537830 |
aatacattaaagaaaaaaagttagaaattttatgagaagttgtagcatagcaacaaaaattgaacttgatgaattttaacaaccttttggcccaggttgg |
8537731 |
T |
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| Q |
317 |
acagtagattctagc |
331 |
Q |
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| T |
8537730 |
acaatagtttctagc |
8537716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 238 - 331
Target Start/End: Complemental strand, 8504302 - 8504209
Alignment:
| Q |
238 |
tagaaattttatgagaagttgtagcatagcaacaagaattgaacttgatgaattttaacaaccttttggtccaggttggacagtagattctagc |
331 |
Q |
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| T |
8504302 |
tagaaattttatgagaagttgtagcatagcaacaaaaattgaacttgatgaattgtaacaaccttttggtccaggttggacaatagtttctagc |
8504209 |
T |
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