View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3537_high_3 (Length: 764)
Name: NF3537_high_3
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 401 - 744
Target Start/End: Complemental strand, 24146126 - 24145782
Alignment:
| Q |
401 |
acatgtttggtttgtgacaccatgatttttacccgaattcctctgaagaaaaaccagttttgccgaatcaattatctcctccttagtctcttgattgttt |
500 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24146126 |
acatgtttggttagtgacagcatgatttttaccccaattcctctcaagaaaaaccagttttgccgaatcaattatctcctccttagtctcttgattgttt |
24146027 |
T |
|
| Q |
501 |
ttccaaaactactcatttcttgacttccataaaacccataagtacata-ctaaaatttctgtgttcctctattttgaagttgctaatttttcaaattact |
599 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24146026 |
ttccaaaattactcatttcttgacttttataaaacccataagtacatttctaaaatttctgtgttcctctattttgaagttactaatttttcaaattact |
24145927 |
T |
|
| Q |
600 |
tattatatcaaagaacacgtcaatggtattccttcctccatatctgcagatgtataactctccgtcgaagttgatcgtaggtgagaaaaacattgcgaca |
699 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24145926 |
tattatatcaaagaacacgtcaatggtattcattcctccatatctgcagatgtataactctccgtcgaagttgatcgtaggtgagaaaaacattgcgaca |
24145827 |
T |
|
| Q |
700 |
gaacttccataaaaatgtcttgatttatgtggtatgctaaggccc |
744 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24145826 |
gaacctccataaaaatgtcttgatttctgtggtatgctaaggccc |
24145782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 8 - 216
Target Start/End: Complemental strand, 24146524 - 24146316
Alignment:
| Q |
8 |
gaaatgaaagatttcaaacaagattgatgaaagaacggcgttgtagagatgccgagcaaaagtgtagcttggaagcctgggaagaatgcaaaagccataa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24146524 |
gaaatgaaagatttcaaacaagattgatgaaagaagtgcgttgtagagatgccgagcaaaagtgtagcttggaaccctgggaagaatgcaaaagccataa |
24146425 |
T |
|
| Q |
108 |
ttagtgattgctcaaaaccagaagcacagatacttactggcctcataattgaaggaagcatggtataataattagtgtcggctggaataggtgaaacttc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24146424 |
ttagtgattgctcaaaaccagaagcacagatacttactggcctcataattgaaggaagcatagtataataattagtgtcggctggaataggtgaaacttc |
24146325 |
T |
|
| Q |
208 |
aaccctaac |
216 |
Q |
| |
|
||||||||| |
|
|
| T |
24146324 |
aaccctaac |
24146316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 402 - 636
Target Start/End: Complemental strand, 24151175 - 24150940
Alignment:
| Q |
402 |
catgtttggtttgtgacaccatgatttttacccgaattcctctgaagaaaaaccagttttgccgaatcaattatctcctccttagtctcttgattgtttt |
501 |
Q |
| |
|
||||||||||| ||||| || ||||||||||| | ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24151175 |
catgtttggttaatgacagcacgatttttaccccagttcctctcaagaaaaatcagttttgccgaatcaattatctcctccttagtctcttgattgtttt |
24151076 |
T |
|
| Q |
502 |
t-ccaaaactactcatttcttgacttccataaaacccataagtacatactaaaatttctgtgttcctctattttgaagttgctaatttttcaaattactt |
600 |
Q |
| |
|
| |||||| | |||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24151075 |
ttccaaaatttctcatttcttgacttccaaaaaacccataagtacatcgtaaaattcatgtgttcctctattttgaagtaactaatttttcaaattactt |
24150976 |
T |
|
| Q |
601 |
attatatcaaagaacacgtcaatggtattccttcct |
636 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24150975 |
gttatatcaaagaacacgtcaatggtattcattcct |
24150940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 256 - 402
Target Start/End: Complemental strand, 24146311 - 24146165
Alignment:
| Q |
256 |
acactttgaaggaaaatcgtactagttcacttcattgttcaacaaatgatcaatcattacgagaggatcataataaacacgccagtctgattgtttatta |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24146311 |
acactttgaaggaaaatcgtactagttcacttcattgttcaacaaatgatcaatcattacgagaggatcataataaacacgccagtctgatcgtttatta |
24146212 |
T |
|
| Q |
356 |
cagcagtgaaaccattacgctgttcttgttggaagctcacaggcgac |
402 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24146211 |
cagcagtgaaaccattacgctgttgttgttggaagctcacaggcgac |
24146165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 24151948 - 24151692
Alignment:
| Q |
8 |
gaaatgaaagatttcaaacaagattgatgaaagaacggcgttgtagagatgccgagcaaaagtgtagcttggaagcctgggaagaatgcaaaagccataa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24151948 |
gaaatgaaagatttcaaacaagattgatgaaagaagggcgttgtagagatgccgagctaaaatgtagcttggaagccttagaagaatgcaaaagccataa |
24151849 |
T |
|
| Q |
108 |
ttagtgattgctcaaaaccagaagcacagatac-----------ttactggcctcataattgaaggaagcatggtataa-taattagtgtcggctggaat |
195 |
Q |
| |
|
||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| |
|
|
| T |
24151848 |
gtagtgattgctcataatcagaagcacagatactcgctacaattttactggcctcataattgaaggaagcatagtataattaattagtgatggctggaat |
24151749 |
T |
|
| Q |
196 |
aggtgaaacttcaacccta--actgacaggtacagtaagtgttaaggagaatattat |
250 |
Q |
| |
|
||| ||||||||||||||| | |||||||||| ||||||| |||| |||| ||||| |
|
|
| T |
24151748 |
aggcgaaacttcaaccctaagattgacaggtacggtaagtgctaagcagaagattat |
24151692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 324 - 400
Target Start/End: Complemental strand, 24151293 - 24151217
Alignment:
| Q |
324 |
cataataaacacgccagtctgattgtttattacagcagtgaaaccattacgctgttcttgttggaagctcacaggcg |
400 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
24151293 |
cataataaacacgccagtctgatcgtttattacagcagtgaaaccattacgctgttgttgttggaaggtcacaggcg |
24151217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 246 - 327
Target Start/End: Complemental strand, 24151667 - 24151586
Alignment:
| Q |
246 |
attatttctcacactttgaaggaaaatcgtactagttcacttcattgttcaacaaatgatcaatcattacgagaggatcata |
327 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||| || ||| | |||||||||| |
|
|
| T |
24151667 |
attatttttcacattttgaaggaaaatcgtactagttcatttcattgttcaacaaatgatcgatgattgcatgaggatcata |
24151586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 651 - 699
Target Start/End: Complemental strand, 24150829 - 24150781
Alignment:
| Q |
651 |
gtataactctccgtcgaagttgatcgtaggtgagaaaaacattgcgaca |
699 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24150829 |
gtatacctctccgtcgaagttgatctcaggtgagaaaaacattgcgaca |
24150781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University