View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_high_30 (Length: 295)
Name: NF3537_high_30
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 277
Target Start/End: Original strand, 47382904 - 47383169
Alignment:
| Q |
12 |
acagatagtaagggaagaactgcaaacttcaagaacacacttcttataatgacatcaaacgttagaagcagtatgattgagaaaggaggccgtctacaag |
111 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||| |||| || |
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| T |
47382904 |
acagatagtaagggaagaactgtcgacttcaagaacacacttcttataatgacatcaaatgttggaagcagtgtgattgagaaaggaggtcgtcgcatag |
47383003 |
T |
|
| Q |
112 |
gatttgaccttgactatgatgagaaggacaatagttataaccgaatcaaaaggttggtgaccgaggagctgaagcaatactttaggccagggttcttgaa |
211 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47383004 |
gatttgaccttgactatgatgagaaggacagcagttataaccgaatcaaaagcttggtgaccgaggagctgaagcaatactttaggccagagttcttgaa |
47383103 |
T |
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| Q |
212 |
taggctggatgaaatgattgttttaaggcaacttacaaaactggaggttaagaagatagctgatat |
277 |
Q |
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| T |
47383104 |
taggctggatgaaatgattgttttcaggcaacttacaaaactggaggttaaggagatagctgatat |
47383169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 116 - 263
Target Start/End: Original strand, 47818073 - 47818220
Alignment:
| Q |
116 |
tgaccttgactatgatgagaaggacaatagttataaccgaatcaaaaggttggtgaccgaggagctgaagcaatactttaggccagggttcttgaatagg |
215 |
Q |
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| T |
47818073 |
tgaccttgactatgatgagaaggacaacagttataaccgaatcaaaagcttggtgatcgaggagctgaagcaatactttaggccagagttcttgaatagg |
47818172 |
T |
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| Q |
216 |
ctggatgaaatgattgttttaaggcaacttacaaaactggaggttaag |
263 |
Q |
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| T |
47818173 |
ctggatgaaatgattgttttcaggcaacttacaaaactggaggctaag |
47818220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 39 - 259
Target Start/End: Original strand, 45115880 - 45116100
Alignment:
| Q |
39 |
ttcaagaacacacttcttataatgacatcaaacgttagaagcagtatgattgagaaaggaggccgtctacaaggatttgaccttgactatgatgagaagg |
138 |
Q |
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|||||||||||||||||||||||||| ||||| ||| |||||||| ||||||||||||||||||| | | ||||| || ||||| ||||||||||| | |
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| T |
45115880 |
ttcaagaacacacttcttataatgacgtcaaatgttggaagcagtgtgattgagaaaggaggccgccgaattggattcgatcttgattatgatgagaaag |
45115979 |
T |
|
| Q |
139 |
acaatagttataaccgaatcaaaaggttggtgaccgaggagctgaagcaatactttaggccagggttcttgaataggctggatgaaatgattgttttaag |
238 |
Q |
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| | |||||||| ||||||| || |||||||| || || || || |||||||| ||||||| ||| || |||||| ||||||||||||||||||| || |
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| T |
45115980 |
atagcagttataatagaatcaagagtttggtgactgaagaactaaaacaatacttcaggccagagtttttaaataggttggatgaaatgattgttttcag |
45116079 |
T |
|
| Q |
239 |
gcaacttacaaaactggaggt |
259 |
Q |
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|||||| |||||| ||||||| |
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| T |
45116080 |
gcaactcacaaaattggaggt |
45116100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 47818002 - 47818070
Alignment:
| Q |
15 |
gatagtaagggaagaactgcaaacttcaagaacacacttcttataatgacatcaaacgttagaagcagt |
83 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
47818002 |
gatagtaagggaagaactgtcgacttcaagaacacacttcttataatgacatcaaatgttggaagcagt |
47818070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 12 - 277
Target Start/End: Original strand, 40245618 - 40245883
Alignment:
| Q |
12 |
acagatagtaagggaagaactgcaaacttcaagaacacacttcttataatgacatcaaacgttagaagcagtatgattgagaaaggaggccgtctacaag |
111 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||| |||| |||||||||||||||| || |
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| T |
40245618 |
acagatagtaagggaagaactgtggacttcaagaacacacttcttataatgacatcaaatgttggaagcagtgtgatcgagaaaggaggccgtcgcatag |
40245717 |
T |
|
| Q |
112 |
gatttgaccttgactatgatgagaaggacaatagttataaccgaatcaaaaggttggtgaccgaggagctgaagcaatactttaggccagggttcttgaa |
211 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||| ||||||| || ||||||||||| |||||||| |||||||||||||||| ||||||||| |
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| T |
40245718 |
gatttgaccttgactatgatgagaaggacagcagttataacagaatcaagagcttggtgaccgaagagctgaaacaatactttaggccagagttcttgaa |
40245817 |
T |
|
| Q |
212 |
taggctggatgaaatgattgttttaaggcaacttacaaaactggaggttaagaagatagctgatat |
277 |
Q |
| |
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|||||| ||||||||||||||||| |||||||| || ||||||||||||||| ||||||| ||||| |
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| T |
40245818 |
taggcttgatgaaatgattgttttcaggcaactcactaaactggaggttaaggagatagcagatat |
40245883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 137 - 270
Target Start/End: Complemental strand, 34054964 - 34054837
Alignment:
| Q |
137 |
ggacaatagttataaccgaatcaaaaggttggtgaccgaggagctgaagcaatactttaggccagggttcttgaataggctggatgaaatgattgtttta |
236 |
Q |
| |
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|||||| |||||||||| ||||||||| |||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| || | |
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| T |
34054964 |
ggacaacagttataaccaaatcaaaagcttggcgaccgaggag-tgaagcaatactttaggccagagttcttgaataggctggatgaaattatcg----- |
34054871 |
T |
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| Q |
237 |
aggcaacttacaaaactggaggttaagaagatag |
270 |
Q |
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|||||||||||| ||||||| |||||| |||||| |
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| T |
34054870 |
aggcaacttacataactggatgttaagtagatag |
34054837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 34055056 - 34054969
Alignment:
| Q |
12 |
acagatagtaagggaagaactgcaaacttcaagaacacacttcttataatgacatcaaacgttagaagcagtatgattgagaaaggaggc |
101 |
Q |
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||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| |||||||| |||||| |||||||||| |
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| T |
34055056 |
acagacagtaagggaagaactgttgacttcaagaacac--ttcttataatgacatcaaatgttggaagcagtgtgattgtgaaaggaggc |
34054969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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