View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_high_34 (Length: 274)
Name: NF3537_high_34
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 10 - 266
Target Start/End: Original strand, 33251827 - 33252083
Alignment:
| Q |
10 |
ggcaaaagacatactcaatccttaattgaagagaaaaatatgtatcagaacataacataacaaataaaaaagaataaatggagaatgaacctgactaata |
109 |
Q |
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| T |
33251827 |
ggcaaaagacatactcaatacttaattgaagagaaaaatatgtatcagaacataacataacaaataaaaaagaataaatggagaatgaacctgactaata |
33251926 |
T |
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| Q |
110 |
acaaatggagcttgtttccaatgaaatgcaaaataactgaggatgcatttctcaaactcattaaccaacttgacatagagagattcatagtccttttcat |
209 |
Q |
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| T |
33251927 |
acaaatggagcttgtttccaatgaaatgcaaaataactgaggatgcatttctcaaactcattaaccaacttgacatagagagattcatagtccttttcat |
33252026 |
T |
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| Q |
210 |
tgccaagatattcaaagatgctttgatcacatcctttggatttttgtagatattctt |
266 |
Q |
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| T |
33252027 |
tgccaagatattcaaagatgctttgatcacatcctttggatttttgtagatattctt |
33252083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 10 - 266
Target Start/End: Original strand, 33271999 - 33272255
Alignment:
| Q |
10 |
ggcaaaagacatactcaatccttaattgaagagaaaaatatgtatcagaacataacataacaaataaaaaagaataaatggagaatgaacctgactaata |
109 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33271999 |
ggcaaaagacatactcaatacttaattgaagagaaaaatatgtatcagaacataacataacaaataaaaaagaataaatggagaatgaacctgactaata |
33272098 |
T |
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| Q |
110 |
acaaatggagcttgtttccaatgaaatgcaaaataactgaggatgcatttctcaaactcattaaccaacttgacatagagagattcatagtccttttcat |
209 |
Q |
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| T |
33272099 |
acaaatggagcttgtttccaatgaaatgcaaaataactgaggatgcatttctcaaactcattaaccaacttgacatagagagattcatagtccttttcat |
33272198 |
T |
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| Q |
210 |
tgccaagatattcaaagatgctttgatcacatcctttggatttttgtagatattctt |
266 |
Q |
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| T |
33272199 |
tgccaagatattcaaagatgctttgatcacatcctttggatttttgtagatattctt |
33272255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 87 - 266
Target Start/End: Original strand, 33303705 - 33303884
Alignment:
| Q |
87 |
atggagaatgaacctgactaataacaaatggagcttgtttccaatgaaatgcaaaataactgaggatgcatttctcaaactcattaaccaacttgacata |
186 |
Q |
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| T |
33303705 |
atggagaatgaacctgactaacaacatatggagcttgtttccaatgaaatgcaaaataactgaggatgcatctctcgaactcatcaaccaatttaacata |
33303804 |
T |
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| Q |
187 |
gagagattcatagtccttttcattgccaagatattcaaagatgctttgatcacatcctttggatttttgtagatattctt |
266 |
Q |
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| T |
33303805 |
gagagattcagagtcattttcattggcaagatatgcatagatgctttggtcacacgctttggatttttgtagatattctt |
33303884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 33312301 - 33312373
Alignment:
| Q |
98 |
acctgactaataacaaatggagcttgtttccaatgaaatgcaaaataactgaggatgcatttctcaaactcat |
170 |
Q |
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| T |
33312301 |
acctgactaataatatatgaagcttggctccaatgaaaagcaaaataactgaggatacatctttcaaactcat |
33312373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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