View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_high_35 (Length: 270)
Name: NF3537_high_35
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_high_35 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 43226580 - 43226849
Alignment:
| Q |
1 |
ccacaaaatcaccttgactggctccaccatttcatcaactccacacaccttctcattgaaaattcgatcatttctcatcttctaaaccacccacacgacg |
100 |
Q |
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| T |
43226580 |
ccacaaaatcaccttgacttgctccaccatttcatcaactccacacaccttctcattaaatatgcgatcaattctcatcttctaaaccacccacacgacg |
43226679 |
T |
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| Q |
101 |
gcgtgccaaattaaccaagcccctcgtctaagctttttagaccgcacctcactcatccaacaagtagcatgaataaacaaattgggatgtgtgataaaac |
200 |
Q |
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| T |
43226680 |
gcgtgccaaattaaccaagcccctcgtctaagctttttagaccgcacctcactcatccaacaagtagcatgaataaacaaattgggatgtgtgataaaac |
43226779 |
T |
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| Q |
201 |
taaaattcagccacctcatcacctccgtccacacctttgaaatcactcgacaatgaagaaaaagatgatt |
270 |
Q |
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| T |
43226780 |
taaaattcagccacctcatcacctccgtccacaccttcgaaatcactcgacaatgaagaaaaagatgatt |
43226849 |
T |
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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 15623223 - 15623144
Alignment:
| Q |
84 |
aaaccacccacacgacggcgtgccaaattaaccaagcccctcgtctaagctttttagaccgcacctcactcatccaacaa |
163 |
Q |
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| T |
15623223 |
aaaccacccaaatgaccgcatgccaaattaaccacgcccctcgtctaagctttttagaccacacctcccttgtccaacaa |
15623144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 15647012 - 15646933
Alignment:
| Q |
84 |
aaaccacccacacgacggcgtgccaaattaaccaagcccctcgtctaagctttttagaccgcacctcactcatccaacaa |
163 |
Q |
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| T |
15647012 |
aaaccacccaaatgaccgcatgccaaattaaccacgcccctcgtctaagctttttagaccacacctcccttgtccaacaa |
15646933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 245
Target Start/End: Complemental strand, 655248 - 655107
Alignment:
| Q |
104 |
tgccaaattaaccaagcccctcgtctaagctttttagaccgcacctcactcatccaacaagtagcatgaataaacaaattgggatgtgtgataaaactaa |
203 |
Q |
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| T |
655248 |
tgccaaattaaccacgccccgcgcctaagcttctttgaccaaacctccctagcccaacaaataacatgaatgaacgggtttggaggggtgataaaattaa |
655149 |
T |
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| Q |
204 |
aattcagccacctcatcacctccgtccacacctttgaaatca |
245 |
Q |
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| T |
655148 |
aattcaaccacttcattaccttcctccacaccttagaaatca |
655107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 16256842 - 16256768
Alignment:
| Q |
8 |
atcaccttgactggctccaccatttcatcaactccacacaccttctcattgaaaattcgatcatttctcatcttc |
82 |
Q |
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| T |
16256842 |
atcaccttgacttgatccaccatttcatcaaccccacaaactttgttattaaaaaccctatcatttctcatcttc |
16256768 |
T |
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