View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3537_high_38 (Length: 265)

Name: NF3537_high_38
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3537_high_38
NF3537_high_38
[»] chr7 (6 HSPs)
chr7 (28-251)||(34500429-34500653)
chr7 (28-142)||(36828547-36828662)
chr7 (28-142)||(37617198-37617313)
chr7 (1-30)||(4790350-4790379)
chr7 (1-33)||(1738443-1738475)
chr7 (1-29)||(38441562-38441590)
[»] chr4 (5 HSPs)
chr4 (54-251)||(44429180-44429379)
chr4 (28-142)||(44421023-44421138)
chr4 (1-33)||(3992972-3993004)
chr4 (1-29)||(43900651-43900679)
chr4 (4-32)||(48196014-48196042)
[»] chr1 (7 HSPs)
chr1 (56-194)||(3170806-3170946)
chr1 (54-142)||(8114114-8114204)
chr1 (189-251)||(3182828-3182890)
chr1 (1-34)||(12483730-12483763)
chr1 (1-33)||(12483624-12483656)
chr1 (1-33)||(14984939-14984971)
chr1 (1-33)||(26471167-26471199)
[»] scaffold0044 (1 HSPs)
scaffold0044 (56-142)||(83310-83398)
[»] chr2 (7 HSPs)
chr2 (48-125)||(8148961-8149036)
chr2 (48-125)||(8153585-8153660)
chr2 (54-181)||(24835855-24835980)
chr2 (1-33)||(9047751-9047783)
chr2 (1-33)||(37666606-37666638)
chr2 (1-33)||(41478635-41478667)
chr2 (1-33)||(41492892-41492924)
[»] chr8 (4 HSPs)
chr8 (1-31)||(7012273-7012303)
chr8 (1-30)||(22782003-22782032)
chr8 (1-37)||(54604-54640)
chr8 (1-33)||(2890264-2890296)
[»] chr5 (4 HSPs)
chr5 (72-127)||(28171595-28171652)
chr5 (1-30)||(13033050-13033079)
chr5 (1-30)||(13103023-13103052)
chr5 (1-34)||(20848069-20848102)
[»] chr3 (4 HSPs)
chr3 (45-116)||(2993869-2993942)
chr3 (1-33)||(8437421-8437453)
chr3 (1-33)||(21295428-21295460)
chr3 (1-29)||(25113348-25113376)
[»] chr6 (2 HSPs)
chr6 (1-30)||(35031000-35031029)
chr6 (1-33)||(26602425-26602457)


Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 28 - 251
Target Start/End: Original strand, 34500429 - 34500653
Alignment:
Q  28 tattaagaataggcagacaattaacgggcacattcattgtatggcttttcagcaagcaat--gggtcaacgaaatcataaatatgcatttattttaattt 125  Q
    ||||||||||||  || |||||| | ||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||    
T  34500429 tattaagaatagcaag-caattagctggcacattcattgtatgacttttcagcaagcaatatgggtcaacgaaatcataaataagcatttattttaattt 34500527  T
Q  126 ttataaccaataatgagcttttactattcccggtatgaaaggcacgaaccgggtcgcatggttaaaaacgggttacatggctgaaatgggttgaaaacac 225  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  34500528 ttataaccaataatgagcttttattattcccggtaagaaaggcacgaaccgggtcgcatgggtaaaaacgggtcacatggctgaaatgggttgaaaacac 34500627  T
Q  226 agtcgttttgctctcttttcattgtt 251  Q
    |||||||||||||||||||| |||||    
T  34500628 agtcgttttgctctcttttccttgtt 34500653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 28 - 142
Target Start/End: Original strand, 36828547 - 36828662
Alignment:
Q  28 tattaagaataggcagacaattaacgggcacattcattgtatggcttttcagcaagcaat--gggtcaacgaaatcataaatatgcatttattttaattt 125  Q
    ||||||||||||  || |||||| | ||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||    
T  36828547 tattaagaatagcaag-caattagctggcacattcattgtatgacttttcagcaagcaatatgggtcaacgaaatcataaataagcatttattttaattt 36828645  T
Q  126 ttataaccaataatgag 142  Q
    |||||||||||||||||    
T  36828646 ttataaccaataatgag 36828662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 28 - 142
Target Start/End: Complemental strand, 37617313 - 37617198
Alignment:
Q  28 tattaagaataggcagacaattaacgggcacattcattgtatggcttttcagcaagcaat--gggtcaacgaaatcataaatatgcatttattttaattt 125  Q
    ||||||||||||  ||| ||||| | ||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||    
T  37617313 tattaagaatagcaaga-aattagctggcacattcattgtatgacttttcagcaagcaatatgggtcaacgaaatcataaataagcatttattttaattt 37617215  T
Q  126 ttataaccaataatgag 142  Q
    |||||||||||||||||    
T  37617214 ttataaccaataatgag 37617198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 4790350 - 4790379
Alignment:
Q  1 ttctcttataaataggaccggaggaagtat 30  Q
    ||||||||||||||||||||||||||||||    
T  4790350 ttctcttataaataggaccggaggaagtat 4790379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 1738475 - 1738443
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattaa 33  Q
    |||||||||||||||||||||||| ||||||||    
T  1738475 ttctcttataaataggaccggagggagtattaa 1738443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 38441562 - 38441590
Alignment:
Q  1 ttctcttataaataggaccggaggaagta 29  Q
    |||||||||||||||||||||||||||||    
T  38441562 ttctcttataaataggaccggaggaagta 38441590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 54 - 251
Target Start/End: Original strand, 44429180 - 44429379
Alignment:
Q  54 ggcacattcattgtatggcttttcagcaagcaat--gggtcaacgaaatcataaatatgcatttattttaatttttataaccaataatgagcttttacta 151  Q
    ||||||||||||||||| ||||||||||||||||  || |||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||    
T  44429180 ggcacattcattgtatgacttttcagcaagcaatatggatcaacgaaatcataaataagcatttattttaatttttataaccaataatgagcttctatta 44429279  T
Q  152 ttcccggtatgaaaggcacgaaccgggtcgcatggttaaaaacgggttacatggctgaaatgggttgaaaacacagtcgttttgctctcttttcattgtt 251  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||| |||||    
T  44429280 ttcccggtatgaaaggcacgaaccgggttgcatgggtaaaaacgggtcacacggctgaaatgggttgaaaacacagtcgttatgctctcttttccttgtt 44429379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 28 - 142
Target Start/End: Original strand, 44421023 - 44421138
Alignment:
Q  28 tattaagaataggcagacaattaacgggcacattcattgtatggcttttcagcaagcaat--gggtcaacgaaatcataaatatgcatttattttaattt 125  Q
    ||||||||||||  || |||||| | ||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||    
T  44421023 tattaagaatagcaag-caattagctggcacattcattgtatgacttttcagcaagcaatatgggtcaacgaaatcataaataagcatttattttaattt 44421121  T
Q  126 ttataaccaataatgag 142  Q
    |||||||||||||||||    
T  44421122 ttataaccaataatgag 44421138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 3993004 - 3992972
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattaa 33  Q
    |||||||||||||||||||||||| ||||||||    
T  3993004 ttctcttataaataggaccggaggtagtattaa 3992972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 43900651 - 43900679
Alignment:
Q  1 ttctcttataaataggaccggaggaagta 29  Q
    |||||||||||||||||||||||||||||    
T  43900651 ttctcttataaataggaccggaggaagta 43900679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 48196014 - 48196042
Alignment:
Q  4 tcttataaataggaccggaggaagtatta 32  Q
    |||||||||||||||||||||||||||||    
T  48196014 tcttataaataggaccggaggaagtatta 48196042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 56 - 194
Target Start/End: Original strand, 3170806 - 3170946
Alignment:
Q  56 cacattcattgtatggcttttcagcaagcaat--gggtcaacgaaatcataaatatgcatttattttaatttttataaccaataatgagcttttactatt 153  Q
    ||||||||||||||| ||||||||||||||||  ||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||    
T  3170806 cacattcattgtatgacttttcagcaagcaatatgggtcaaagaaatcataaataagcatttactttaatttttataaccaataatgagcttttattatt 3170905  T
Q  154 cccggtatgaaaggcacgaaccgggtcgcatggttaaaaac 194  Q
    ||||||||||||| ||||||||||||||||||| |||||||    
T  3170906 cccggtatgaaagtcacgaaccgggtcgcatgggtaaaaac 3170946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 54 - 142
Target Start/End: Complemental strand, 8114204 - 8114114
Alignment:
Q  54 ggcacattcattgtatggcttttcagcaagcaat--gggtcaacgaaatcataaatatgcatttattttaatttttataaccaataatgag 142  Q
    ||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8114204 ggcacattcattgtatgacttttcagcaagcaatatgggtcaacgaaatcataaataagcatttattttaatttttataaccaataatgag 8114114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 3182828 - 3182890
Alignment:
Q  189 aaaaacgggttacatggctgaaatgggttgaaaacacagtcgttttgctctcttttcattgtt 251  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  3182828 aaaaacgggtcacatggctgaaatgggttgaaaacacaatcgttttgctctcttttccttgtt 3182890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 12483730 - 12483763
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattaag 34  Q
    |||||||||||||||||||||||| |||||||||    
T  12483730 ttctcttataaataggaccggaggtagtattaag 12483763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 12483656 - 12483624
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattaa 33  Q
    |||||||||||||||||||||||| ||||||||    
T  12483656 ttctcttataaataggaccggagggagtattaa 12483624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 14984939 - 14984971
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattaa 33  Q
    |||||||||||||||||||||||| ||||||||    
T  14984939 ttctcttataaataggaccggagggagtattaa 14984971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 26471167 - 26471199
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattaa 33  Q
    |||||||||||||||||||||||| ||||||||    
T  26471167 ttctcttataaataggaccggaggtagtattaa 26471199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 142
Target Start/End: Complemental strand, 83398 - 83310
Alignment:
Q  56 cacattcattgtatggcttttcagcaagcaat--gggtcaacgaaatcataaatatgcatttattttaatttttataaccaataatgag 142  Q
    ||||||||||||||| ||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  83398 cacattcattgtatgacttttcagcaagcaatatgggtcaacgaaatcataaataagcatttattttaatttttataaccaataatgag 83310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 8149036 - 8148961
Alignment:
Q  48 ttaacgggcacattcattgtatggcttttcagcaagcaatgggtcaacgaaatcataaatatgcatttattttaattt 125  Q
    ||||| |||||||||||||| || |||||||||||||||||  |||| ||||||||||||||||||||||||||||||    
T  8149036 ttaactggcacattcattgtgtgacttttcagcaagcaatg--tcaaagaaatcataaatatgcatttattttaattt 8148961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 8153660 - 8153585
Alignment:
Q  48 ttaacgggcacattcattgtatggcttttcagcaagcaatgggtcaacgaaatcataaatatgcatttattttaattt 125  Q
    ||||| |||||||||||||| || |||||||||||||||||  |||| ||||||||||||||||||||||||||||||    
T  8153660 ttaactggcacattcattgtgtgacttttcagcaagcaatg--tcaaagaaatcataaatatgcatttattttaattt 8153585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 181
Target Start/End: Complemental strand, 24835980 - 24835855
Alignment:
Q  54 ggcacattcattgtatggcttttcagcaagca-atgggtcaacgaaatcataaatatgcatttattttaatttttataaccaataatgagcttttactat 152  Q
    |||||||||||||  ||  | ||||||||||| ||||||||||||||||||||||| |||||| ||||  |||||| ||||||||| ||||||||| |||    
T  24835980 ggcacattcattgcgtgagtattcagcaagcatatgggtcaacgaaatcataaataagcatttttttt--tttttaaaaccaataacgagcttttattat 24835883  T
Q  153 tcccggtatgaaaggcacgaaccgggtcg 181  Q
     |||   ||| || |||||||||||||||    
T  24835882 ccccataatg-aatgcacgaaccgggtcg 24835855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 9047783 - 9047751
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattaa 33  Q
    |||||||||||||||||||||||| ||||||||    
T  9047783 ttctcttataaataggaccggagggagtattaa 9047751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 37666638 - 37666606
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattaa 33  Q
    |||||||||||||||||||||||| ||||||||    
T  37666638 ttctcttataaataggaccggagggagtattaa 37666606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 41478667 - 41478635
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattaa 33  Q
    |||||||||||||||||||||||| ||||||||    
T  41478667 ttctcttataaataggaccggagggagtattaa 41478635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 41492924 - 41492892
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattaa 33  Q
    |||||||||||||||||||||||| ||||||||    
T  41492924 ttctcttataaataggaccggagggagtattaa 41492892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 7012273 - 7012303
Alignment:
Q  1 ttctcttataaataggaccggaggaagtatt 31  Q
    |||||||||||||||||||||||||||||||    
T  7012273 ttctcttataaataggaccggaggaagtatt 7012303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 22782003 - 22782032
Alignment:
Q  1 ttctcttataaataggaccggaggaagtat 30  Q
    ||||||||||||||||||||||||||||||    
T  22782003 ttctcttataaataggaccggaggaagtat 22782032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 54640 - 54604
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattaagaat 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  54640 ttctcttataaataggaccggagggagtataaagaat 54604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2890264 - 2890296
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattaa 33  Q
    |||||||||||||||||||||||| ||||||||    
T  2890264 ttctcttataaataggaccggaggtagtattaa 2890296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 28171652 - 28171595
Alignment:
Q  72 cttttcagcaagcaat--gggtcaacgaaatcataaatatgcatttattttaattttt 127  Q
    ||||||||||||||||  ||||||||||||||||||||| |  ||||||||| |||||    
T  28171652 cttttcagcaagcaatatgggtcaacgaaatcataaataagattttattttatttttt 28171595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 13033079 - 13033050
Alignment:
Q  1 ttctcttataaataggaccggaggaagtat 30  Q
    ||||||||||||||||||||||||||||||    
T  13033079 ttctcttataaataggaccggaggaagtat 13033050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 13103052 - 13103023
Alignment:
Q  1 ttctcttataaataggaccggaggaagtat 30  Q
    ||||||||||||||||||||||||||||||    
T  13103052 ttctcttataaataggaccggaggaagtat 13103023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 20848102 - 20848069
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattaag 34  Q
    |||||||||||||||||||||||| |||||||||    
T  20848102 ttctcttataaataggaccggaggtagtattaag 20848069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 2993869 - 2993942
Alignment:
Q  45 caattaacgggcacattcattgtatggcttttcagcaagca--atgggtcaacgaaatcataaatatgcattta 116  Q
    |||||| | ||||||||| |||| || ||||||||||||||  |||| |||| |||||||||||||| ||||||    
T  2993869 caattagctggcacattcgttgtgtgacttttcagcaagcaatatggatcaaagaaatcataaatatacattta 2993942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 8437453 - 8437421
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattaa 33  Q
    |||||||||||||||||||||||| ||||||||    
T  8437453 ttctcttataaataggaccggaggtagtattaa 8437421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 21295428 - 21295460
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattaa 33  Q
    |||||||||||||||||||||||| ||||||||    
T  21295428 ttctcttataaataggaccggaggtagtattaa 21295460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 25113376 - 25113348
Alignment:
Q  1 ttctcttataaataggaccggaggaagta 29  Q
    |||||||||||||||||||||||||||||    
T  25113376 ttctcttataaataggaccggaggaagta 25113348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 35031029 - 35031000
Alignment:
Q  1 ttctcttataaataggaccggaggaagtat 30  Q
    ||||||||||||||||||||||||||||||    
T  35031029 ttctcttataaataggaccggaggaagtat 35031000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 26602425 - 26602457
Alignment:
Q  1 ttctcttataaataggaccggaggaagtattaa 33  Q
    |||||||||||||||||||||||| ||||||||    
T  26602425 ttctcttataaataggaccggagggagtattaa 26602457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University