View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_high_39 (Length: 262)
Name: NF3537_high_39
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_high_39 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 14304576 - 14304321
Alignment:
| Q |
1 |
agcttcaaaagaggcggaacaccaccttcttcaacaataatcttcttattcctatcattatcttgtgctaacgaagcaagttcatttgtagcttcaattt |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14304576 |
agcttcaaaagaggcggaacaccgccttcttcaacaataatcttcttattcctatcattatcttgtgctaacgaagcaagttcatttgtagcttcaattt |
14304477 |
T |
|
| Q |
101 |
tatcattcaattgacccatttgaattgaagctataaaagaccatacccatgacagaattggatcattactcgcaatcggtggaagcgataagttaattcc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14304476 |
tatcattcaattgacccatttgaattgaagctataaaagaccatacccatgacagaattggatcattactcgcaatcggtggaagcgataagttaattcc |
14304377 |
T |
|
| Q |
201 |
accgccgccgccggagccttcgacgtcgaggatacttaaaagccacttcatctcac |
256 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
14304376 |
accgccgccgccggagccgtcgacgtcgaggatacttaaaagccacttcatatcac |
14304321 |
T |
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