View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3537_high_40 (Length: 262)

Name: NF3537_high_40
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3537_high_40
NF3537_high_40
[»] chr4 (4 HSPs)
chr4 (63-244)||(13848222-13848403)
chr4 (1-59)||(44420769-44420827)
chr4 (63-149)||(3743882-3743968)
chr4 (66-109)||(4446065-4446108)
[»] chr7 (4 HSPs)
chr7 (60-244)||(34343821-34344002)
chr7 (1-59)||(34500167-34500225)
chr7 (1-59)||(37617506-37617564)
chr7 (1-59)||(36828297-36828355)
[»] scaffold0044 (1 HSPs)
scaffold0044 (1-59)||(83618-83676)
[»] chr5 (4 HSPs)
chr5 (1-59)||(28171825-28171883)
chr5 (66-109)||(5143270-5143313)
chr5 (66-109)||(5815915-5815958)
chr5 (66-109)||(7627796-7627839)
[»] chr3 (2 HSPs)
chr3 (1-59)||(2993690-2993748)
chr3 (67-155)||(34823081-34823169)
[»] chr1 (4 HSPs)
chr1 (1-59)||(3170502-3170560)
chr1 (1-59)||(8114423-8114481)
chr1 (59-110)||(614783-614834)
chr1 (56-110)||(1481034-1481088)
[»] chr2 (3 HSPs)
chr2 (12-59)||(24836204-24836251)
chr2 (24-59)||(8149041-8149076)
chr2 (24-59)||(8153665-8153700)
[»] chr8 (3 HSPs)
chr8 (66-109)||(35532021-35532064)
chr8 (1-59)||(1061588-1061646)
chr8 (63-97)||(35532793-35532827)


Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 63 - 244
Target Start/End: Complemental strand, 13848403 - 13848222
Alignment:
Q  63 agcccctaatatggacctcaaattaaagggaccatgagtgaacctcaagaaatgacctacactagccagtcatattttttgggaaaacaaaaccttacat 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13848403 agcccctaatatggacctcaaattaaagggaccatgagtgaacctcaacaaatgacctacactagccagtcatattttttgggaaaacaaaaccttacat 13848304  T
Q  163 cttcttaaaacactcaattcctccatcttctactttcatgttcccttattcttgtgaaattaaaagttgcattggaaaccct 244  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13848303 cttcttcaaacactcaattcctccatcttctactgtcatgttcccttattcttgtgaaattaaaagttgcattggaaaccct 13848222  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 44420827 - 44420769
Alignment:
Q  1 atattgaaaatattactgcatttatattttgatagttatttttctgacaaattatttta 59  Q
    ||||| || |||||||| ||| ||||| |||||||||||||||||||||||||||||||    
T  44420827 atatttaatatattacttcatatatatattgatagttatttttctgacaaattatttta 44420769  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 3743882 - 3743968
Alignment:
Q  63 agcccctaatatggacctc-aaattaaagggaccatgagtgaacctcaagaaatgacctacactagccagtcatattttttgggaaaa 149  Q
    ||||||||||||||||| | |||||||| |||||||| ||||||||||| |||||| || |  ||||| ||||||| |||| ||||||    
T  3743882 agcccctaatatggacccctaaattaaa-ggaccatgggtgaacctcaacaaatgatctgctgtagccggtcatatcttttaggaaaa 3743968  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 4446108 - 4446065
Alignment:
Q  66 ccctaatatggacctcaaattaaagggaccatgagtgaacctca 109  Q
    |||||||||||||||||| |||||||||||||  ||||||||||    
T  4446108 ccctaatatggacctcaatttaaagggaccattggtgaacctca 4446065  T

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Target: chr7 (Bit Score: 151; Significance: 6e-80; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 60 - 244
Target Start/End: Complemental strand, 34344002 - 34343821
Alignment:
Q  60 ggaagcccctaatatggacctcaaattaaagggaccatgagtgaacctcaagaaatgacctacactagccagtcatattttttgggaaaacaaaacctta 159  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||   ||||||||||||||||||||||||||||||    
T  34344002 ggaagcccttaatatgaacctcaaattaaagggaccatgagtgaacctcaacaaatgacctacacta---agtcatattttttgggaaaacaaaacctta 34343906  T
Q  160 catcttcttaaaacactcaattcctccatcttctactttcatgttcccttattcttgtgaaattaaaagttgcattggaaaccct 244  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34343905 catcttcttcaaacactcaattcctccatcttctactgtcatgttcccttattcttgtgaaattaaaagttgcattggaaaccct 34343821  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 34500225 - 34500167
Alignment:
Q  1 atattgaaaatattactgcatttatattttgatagttatttttctgacaaattatttta 59  Q
    ||||| || |||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  34500225 atatttaatatattacttcatatatattttgatagttatttttctgacaaattatttta 34500167  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 37617506 - 37617564
Alignment:
Q  1 atattgaaaatattactgcatttatattttgatagttatttttctgacaaattatttta 59  Q
    ||||| || |||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  37617506 atatttaatatattacttcatatatattttgatagttatttttctgacaaattatttta 37617564  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 36828355 - 36828297
Alignment:
Q  1 atattgaaaatattactgcatttatattttgatagttatttttctgacaaattatttta 59  Q
    ||||| || |||||||| ||| |||||||||||||||||||||  ||||||||||||||    
T  36828355 atatttaatatattacttcatatatattttgatagttattttttcgacaaattatttta 36828297  T

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Target: scaffold0044 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 83618 - 83676
Alignment:
Q  1 atattgaaaatattactgcatttatattttgatagttatttttctgacaaattatttta 59  Q
    ||||| || |||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  83618 atatttaatatattacttcatatatattttgatagttatttttctgacaaattatttta 83676  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 28171825 - 28171883
Alignment:
Q  1 atattgaaaatattactgcatttatattttgatagttatttttctgacaaattatttta 59  Q
    ||||| || |||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  28171825 atatttaatatattacttcatatatattttgatagttatttttctgacaaattatttta 28171883  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 5143313 - 5143270
Alignment:
Q  66 ccctaatatggacctcaaattaaagggaccatgagtgaacctca 109  Q
    |||||||||||||||||| |||||||||||||  ||||||||||    
T  5143313 ccctaatatggacctcaatttaaagggaccattggtgaacctca 5143270  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 5815915 - 5815958
Alignment:
Q  66 ccctaatatggacctcaaattaaagggaccatgagtgaacctca 109  Q
    |||||||||||||||||| |||||||||||||  ||||||||||    
T  5815915 ccctaatatggacctcaatttaaagggaccattggtgaacctca 5815958  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 7627839 - 7627796
Alignment:
Q  66 ccctaatatggacctcaaattaaagggaccatgagtgaacctca 109  Q
    |||||||||||||||||| |||||||||||||  ||||||||||    
T  7627839 ccctaatatggacctcaatttaaagggaccattggtgaacctca 7627796  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 2993748 - 2993690
Alignment:
Q  1 atattgaaaatattactgcatttatattttgatagttatttttctgacaaattatttta 59  Q
    ||||| || |||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  2993748 atatttaatatattacttcatatatattttgatagttatttttctgacaaattatttta 2993690  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 155
Target Start/End: Complemental strand, 34823169 - 34823081
Alignment:
Q  67 cctaatatggacctcaaattaaagggaccatgagtgaacctcaagaaatgacctacactagccagtcatattttttgggaaaacaaaac 155  Q
    ||||||||||||| |||| | || ||| |||||||||||||||| ||||||||| | |||||| ||||||| |||| |||||| |||||    
T  34823169 cctaatatggaccccaaaattaaaggatcatgagtgaacctcaacaaatgacctgctctagccggtcatatcttttaggaaaaaaaaac 34823081  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 3170560 - 3170502
Alignment:
Q  1 atattgaaaatattactgcatttatattttgatagttatttttctgacaaattatttta 59  Q
    ||||| || |||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  3170560 atatttaatatattacttcatatatattttgatagttatttttctgacaaattatttta 3170502  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 8114423 - 8114481
Alignment:
Q  1 atattgaaaatattactgcatttatattttgatagttatttttctgacaaattatttta 59  Q
    ||||| || |||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  8114423 atatttaatatattacttcatatatattttgatagttatttttctgacaaattatttta 8114481  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 614834 - 614783
Alignment:
Q  59 aggaagcccctaatatggacctcaaattaaagggaccatgagtgaacctcaa 110  Q
    |||||||| ||||||| |||||||| |||||||||||||||||  |||||||    
T  614834 aggaagcctctaatatagacctcaatttaaagggaccatgagtagacctcaa 614783  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 1481034 - 1481088
Alignment:
Q  56 tttaggaagcccctaatatggacctcaaattaaagggaccatgagtgaacctcaa 110  Q
    |||||| ||| ||||||||||||||||||||||| ||||||  | ||||||||||    
T  1481034 tttagggagctcctaatatggacctcaaattaaaaggaccaccaatgaacctcaa 1481088  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 24836204 - 24836251
Alignment:
Q  12 attactgcatttatattttgatagttatttttctgacaaattatttta 59  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||    
T  24836204 attacttcatatatattttgatagttatttttctgacaaattatttta 24836251  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 8149041 - 8149076
Alignment:
Q  24 atattttgatagttatttttctgacaaattatttta 59  Q
    ||||||||||||||||||||||||||||||||||||    
T  8149041 atattttgatagttatttttctgacaaattatttta 8149076  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 8153665 - 8153700
Alignment:
Q  24 atattttgatagttatttttctgacaaattatttta 59  Q
    ||||||||||||||||||||||||||||||||||||    
T  8153665 atattttgatagttatttttctgacaaattatttta 8153700  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 35532021 - 35532064
Alignment:
Q  66 ccctaatatggacctcaaattaaagggaccatgagtgaacctca 109  Q
    |||||||||||||||||| |||||||||||||  ||||||||||    
T  35532021 ccctaatatggacctcaatttaaagggaccattggtgaacctca 35532064  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 1061646 - 1061588
Alignment:
Q  1 atattgaaaatattactgcatttatattttgatagttatttttctgacaaattatttta 59  Q
    ||||| || |||||||| |||| |||||||  |||||||||||| ||||||||||||||    
T  1061646 atatttaatatattacttcattgatattttattagttatttttcggacaaattatttta 1061588  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 97
Target Start/End: Complemental strand, 35532827 - 35532793
Alignment:
Q  63 agcccctaatatggacctcaaattaaagggaccat 97  Q
    ||||||||||||||||||||| |||||||||||||    
T  35532827 agcccctaatatggacctcaatttaaagggaccat 35532793  T

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