View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_high_44 (Length: 251)
Name: NF3537_high_44
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_high_44 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 42562750 - 42562965
Alignment:
| Q |
18 |
cctagattgtcaggctaggtctgattaatcatgctaaggaatacacacacgcctaaattgtcactgtaataaaaactctcaagattagggccacgtaatt |
117 |
Q |
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| T |
42562750 |
cctagattgtcaggctaggtcagattaatcatgctaaggaatacacacacgcctaaattgtccctgtaataaaaactctcaagattagggccacgtaatt |
42562849 |
T |
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| Q |
118 |
atactaaatagggcatgtgtaccaaaagtgtcacaaatctataataattaattcctattaataaacatagaacaaccttagttaaacagtcaggcgaatg |
217 |
Q |
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| T |
42562850 |
atactaaatagggcatgtgtaccaaaagtgtcacaaatctataataattaattcctattaataaacatagaacaa------------------gcgaatg |
42562931 |
T |
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| Q |
218 |
ttgtcaatggtctaaatgcaagatgacctgtgtt |
251 |
Q |
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| T |
42562932 |
ttgtcaatggtctaaatgcaagatgacctgtgtt |
42562965 |
T |
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