View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_high_53 (Length: 244)
Name: NF3537_high_53
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_high_53 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 7 - 244
Target Start/End: Complemental strand, 18714818 - 18714585
Alignment:
| Q |
7 |
gaagcgccacaaacagacacctttgaagggataaacttgtgccatacatcaactaccatcgacctgtccaccgggttaccattgttggtgagaaagttgt |
106 |
Q |
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| T |
18714818 |
gaagcgccacgaacagacacctttgaagggataaacttgtgccatacatcaactaccatcgacctgtccaccgggttaccattgttggtgagaaagttgt |
18714719 |
T |
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| Q |
107 |
aagcctcccgcactgtgtaacgatgagaaggatgtaataaccacctcctgcaccgtgtgttgttattgnnnnnnnnnnnnnnnnaaaactcggtatccga |
206 |
Q |
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| T |
18714718 |
aagcctcccgaactgtgtaacgatgagaaggatgtaataaccacctcctgcaccgtgtgttgttatt----ttatttttttttgtaaactcggtatccga |
18714623 |
T |
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| Q |
207 |
cgtgtgttgttattcttgttggtggtgatgaggctcct |
244 |
Q |
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| T |
18714622 |
cgtgtgttgttattcttgttggtggtgatgaggctcct |
18714585 |
T |
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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 46609956 - 46610083
Alignment:
| Q |
27 |
ctttgaagggataaacttgtgccatacatcaactaccatcgacctgtccaccgggttaccattgttggtgagaaagttgtaagcctcccgcactgtgtaa |
126 |
Q |
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| T |
46609956 |
ctttgaaggaatatacttatgccatacatcatctaccatcgacctatacaccgggttaccgttgttggtgagaaagtggtaagcttcccgcaccgtgtaa |
46610055 |
T |
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| Q |
127 |
cgatgagaaggatgtaataaccacctcc |
154 |
Q |
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| T |
46610056 |
ccatgagaaggatgtagtaaccacctcc |
46610083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 6519328 - 6519461
Alignment:
| Q |
21 |
agacacctttgaagggataaacttgtgccatacatcaactaccatcgacctgtccaccgggttaccattgttggtgagaaagttgtaagcctcccgcact |
120 |
Q |
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| T |
6519328 |
agacacctttgaaggaatactcttatgccaaacatcatccaccgtcgacttgtccatcgggctaccgttgtaagtgagaaagcagtaagcttcccgcacc |
6519427 |
T |
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| Q |
121 |
gtgtaacgatgagaaggatgtaataaccacctcc |
154 |
Q |
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| T |
6519428 |
ttgtaaccattagaaggatttaaaagccacctcc |
6519461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 154
Target Start/End: Complemental strand, 12237742 - 12237613
Alignment:
| Q |
25 |
acctttgaagggataaacttgtgccatacatcaactaccatcgacctgtccaccgggttaccattgttggtgagaaagttgtaagcctcccgcactgtgt |
124 |
Q |
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| T |
12237742 |
accttcgaagggatagacttatgccacacatcatctaccaacgacctgcccaccaggttaccattgtttgtgagaaaacgatatgactcccgtactgtgt |
12237643 |
T |
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| Q |
125 |
aacgatgagaaggatgtaataaccacctcc |
154 |
Q |
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| T |
12237642 |
aaccatgagaaggatgtaataaccatctcc |
12237613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 25720801 - 25720710
Alignment:
| Q |
63 |
catcgacctgtccaccgggttaccattgttggtgagaaagttgtaagcctcccgcactgtgtaacgatgagaaggatgtaataaccacctcc |
154 |
Q |
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| T |
25720801 |
catcgacctatccacaaagttaccattattggtaagaaagcggtaagcttccctaaccgtgtaaccatgagaaggatctagtaaccacctcc |
25720710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 20122913 - 20122861
Alignment:
| Q |
22 |
gacacctttgaagggataaacttgtgccatacatcaactaccatcgacctgtc |
74 |
Q |
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||||||||||| || |||||||||||||| |||||| | |||| ||||||||| |
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| T |
20122913 |
gacacctttgagggaataaacttgtgccacacatcatcaaccaacgacctgtc |
20122861 |
T |
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