View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_low_10 (Length: 535)
Name: NF3537_low_10
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 464; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 18 - 530
Target Start/End: Complemental strand, 36360686 - 36360175
Alignment:
| Q |
18 |
catttgttgcttgcaatagcaacttgcaacaggacccacttattactacatacgttgatgattcaccttcctacgatgatagtgatacattattattcaa |
117 |
Q |
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| T |
36360686 |
catttgttgcttgcaatagcaacttgcaagaggacccacttattactacatacgttgatgattcaccttcctacgatgatagtgatacattattattcaa |
36360587 |
T |
|
| Q |
118 |
gaacatgatagagcaaaacacaaatgatgttttgtgcttagaccaatttggtgtctcttcacgttcacttaaaattgttaatgttagagattatggagct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36360586 |
gaacatgatagagcaaaacacaaatgatgttttgtgcttagaccaatttggtgtctcttcacgttcacttaaaattgttaatgttagagattatggagct |
36360487 |
T |
|
| Q |
218 |
aaaggggatggtcatacggatgacacacaggtataataaactcttaatatgtagcttaaaaatcataatatatacgaactattgataaatttcatattta |
317 |
Q |
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| T |
36360486 |
aaaggggatggtcatacggatgacacacaggtataataaactcttaatatatagcttaaaaatcaaaatatatacgaactattgataaatttcatattta |
36360387 |
T |
|
| Q |
318 |
atattttgtatgcccatgcgatactaatttggttttctattaacatcaaatgattttctnnnnnnntaacttaaattttcctataattggacatataata |
417 |
Q |
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| T |
36360386 |
atattttgtatgcccatacgatactaatttggttttctattaacatc-aatgattttctaaaaaaataacttaaattttcctataattggacatataata |
36360288 |
T |
|
| Q |
418 |
atattcaggcattcaagaaggcttgggaagtagtatgttcgtcagggcaatcagttttagtggcacctcaagattataattatctactcaaaccaatcag |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36360287 |
atattcaggcattcaagaaggcttgggaagtagtatgttcgtcagggcaatcagttttagtggcacctcaagattataattatctactcaaaccaatcag |
36360188 |
T |
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| Q |
518 |
attctctgctcct |
530 |
Q |
| |
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|||||||| |||| |
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| T |
36360187 |
attctctggtcct |
36360175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 416 - 530
Target Start/End: Complemental strand, 36349031 - 36348911
Alignment:
| Q |
416 |
taatattcaggcattcaagaaggcttgggaagtagtatgttcgtcagg------gcaatcagttttagtggcacctcaagattataattatctactcaaa |
509 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||| ||||| | || ||||||| || |||||||||||| ||| ||||||||||||| |
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| T |
36349031 |
taatattcaggcattcgagaaggcttgggaagcagtatgttcttcaggaggaggggaagcagtttttgttgcacctcaagataatatttatctactcaaa |
36348932 |
T |
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| Q |
510 |
ccaatcagattctctgctcct |
530 |
Q |
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|||||||||||||||| |||| |
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| T |
36348931 |
ccaatcagattctctggtcct |
36348911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 36349196 - 36349119
Alignment:
| Q |
175 |
ttcacgttcacttaaaattgttaatgttagagattatggagctaaaggggatggtcatacggatgacacacaggtata |
252 |
Q |
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|||| |||||||| ||||| ||||||| || |||||||||||||||||||||||| | || ||||||||||||||||| |
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| T |
36349196 |
ttcaagttcacttcaaatttttaatgtcagtgattatggagctaaaggggatggtaaaactgatgacacacaggtata |
36349119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 36349320 - 36349259
Alignment:
| Q |
18 |
catttgttgcttgcaatagcaacttgcaacaggacccacttattactacatacgttgatgat |
79 |
Q |
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|||||| |||||||| |||| |||| ||| || ||||||||||||||||||||||||||| |
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| T |
36349320 |
catttgctgcttgcagtagctacttccaagagtttccacttattactacatacgttgatgat |
36349259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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