View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3537_low_11 (Length: 527)
Name: NF3537_low_11
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 13 - 407
Target Start/End: Complemental strand, 44953859 - 44953468
Alignment:
| Q |
13 |
aatatttaaaaaggaaaggtgagagtacttaaaaagttgaaaatttgaagtgatttgattgagtgattaatgaccacaagaatnnnnnnntgatgaggtt |
112 |
Q |
| |
|
||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44953859 |
aatatttaaaaaggaaacgtgagagtattaaaaaagttgaaaatttgaagtgatttgattgagtgattaatgaccacaagaataaaaaaatgatgaggtt |
44953760 |
T |
|
| Q |
113 |
atttattattattatggttgaattaaaaagtagaaacctacacagcgaaaatatggcgttacaaggattgagtactgtttctgtggcagttacaatatct |
212 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44953759 |
atttattattat---ggttgaattaaaaagtagaaacctccacagcgaaaatatggcgttacaaggattgagtactgtttctgtggcagttacaatatct |
44953663 |
T |
|
| Q |
213 |
gtaaggccttcgacttctaaacttgttcgaattccttcttcaagtttatgtcaggtcccttctccgagaatcagaattgggtcggtgcggtgtaaagcgg |
312 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44953662 |
gtaaggccttcgacttctaatcttgttcgaattccttcttcaagtttatgtcaggtcccttctccgagaatcagaattgggtcggtacggtgtaaagcgg |
44953563 |
T |
|
| Q |
313 |
tgggagaaaaccagcagcaagtttataacggtgtttatggcccctggaccgttgaagccgaggatgtcaaagaggtaccaccttctcctcattca |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44953562 |
tgggagaaaaccagcagcaagtttataacggtgtttatggcccctggaccgttgaagccgaggatgtcaaagaggtaccaccttctcctcattca |
44953468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University