View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_low_12 (Length: 518)
Name: NF3537_low_12
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 483; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 17 - 511
Target Start/End: Original strand, 12222038 - 12222532
Alignment:
| Q |
17 |
aaccttagctgacaagggcactgctttttccaatgtaagtccaaaggcctcatccatgtttagctctacaccatttggtaatttccagtcaaaagagtgt |
116 |
Q |
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| T |
12222038 |
aaccgtagctgacaagggcactgctttttccaatgtaagtccaaaggcctcatccatgtttagctcaacaccatttggtaatttccagtcaaaagagtgt |
12222137 |
T |
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| Q |
117 |
accaatgtgcccagaatgtactcaatcaccacaatagccattttatacccaacacaaactctccttccagctccaaaaggaatcaattcaaaatcaactc |
216 |
Q |
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| T |
12222138 |
accaatgtgcccagaatgtactcaatcaccacaatagccattttatacccaacacaaactcttcttccagctccaaaaggaatcaattcaaaatcaactc |
12222237 |
T |
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| Q |
217 |
cacttggatcaattcttgcatattttccacttaaaaatctttcaggtttgaattctaatgggttagcccatatatttgggtctctccctattgcccatat |
316 |
Q |
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| T |
12222238 |
cacttggatcaattcttgcatattttccacttaaaaatctttcaggtttgaattctaatgggttagcccatatatttgggtctctccctattgcccatat |
12222337 |
T |
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| Q |
317 |
gttaacattgaaccttgtatttttggggatgtagtaaccattaatttggcatgctttatttgacacccttggaacactaaggggtgtagatggatgcaaa |
416 |
Q |
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| T |
12222338 |
gttaacattgaaccttgtatttttggggatgtagtaaccattaatttggcatgctttatttgacacccttggaacactaaggggtgtagatggatgcaaa |
12222437 |
T |
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| Q |
417 |
cgatatgtctccttgcatattgcttgaaggtatggtaatttttctaggtcagattcaactagcattctttccctgcctaccacttgattcatctc |
511 |
Q |
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| T |
12222438 |
cgatatgtctccttgcatattgcttgaaggtatggtaatttttctaggtcagattcaactagcattctttccctgcctaccacttgattcatctc |
12222532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 84 - 369
Target Start/End: Original strand, 12278568 - 12278853
Alignment:
| Q |
84 |
acaccatttggtaatttccagtcaaaagagtgtaccaatgtgcccagaatgtactcaatcaccacaatagccattttatacccaacacaaactctccttc |
183 |
Q |
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|||||||||||||| ||||| ||||| || || ||||| ||||||| |||||| | || | |||||| ||||| | ||| |||||| ||| || | |
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| T |
12278568 |
acaccatttggtaacttccaatcaaatgaatgaaccaaagtgcccaaaatgtattgaacaagcacaatccccattcttgttccagcacaaattcttctcc |
12278667 |
T |
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| Q |
184 |
cagctccaaaaggaatcaattcaaaatcaactccacttggatcaattcttgcatattttccacttaaaaatctttcaggtttgaattctaatgggttagc |
283 |
Q |
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| T |
12278668 |
cagcaccaaaaggaatcaactcaaaatcatttccacgtggatcaattttagcatttttaccagttaaaaacctttctggattaaactccaatggattctc |
12278767 |
T |
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| Q |
284 |
ccatatatttgggtctctccctattgcccatatgttaacattgaaccttgtatttttggggatgtagtaaccattaatttggcatg |
369 |
Q |
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| T |
12278768 |
ccacacattagggtctcttcctatagcccaaatgttcacacttaacctagtgttttttgggatgtaatagccatttacttggcatg |
12278853 |
T |
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