View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_low_14 (Length: 479)
Name: NF3537_low_14
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 10 - 463
Target Start/End: Complemental strand, 10747005 - 10746550
Alignment:
| Q |
10 |
aagaaaatatggtaaatgaaagagaaagaacgataattttaccaaattatctttatcaactattaaagtattttaattatgataaatgttgtgtagtttt |
109 |
Q |
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| T |
10747005 |
aagaaaatatggtaaatgaaagagaaagaacgatgattttatcaaattatctttatcaactattaaagtattttaattatgataaatgttgtgtagtttt |
10746906 |
T |
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| Q |
110 |
aaggtgtcaacctaatcgtagaaaaacgataatttaaccaaattatctttataaactattgaagaagtaaactgcaatggataaaacttctccccatagg |
209 |
Q |
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| T |
10746905 |
aaggtgtcaacctaattgtaaaaaaacgatgatttaaccaaattatctttatcaactattgaaaaagtaaactgcaatgaataaaacttctcctcatagg |
10746806 |
T |
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| Q |
210 |
ttcttaggcggatcatttcctttcaacatat--tcattctttctagtgtcattgtgtttaggtgtgtaatgtaaggttgtgtgacttaaatgaagtattc |
307 |
Q |
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| T |
10746805 |
ttcttaggccaatcatttcctttcaacatatattcattctttttagtgtcattgtgtttaggtgtgtaatgtaaggtggtgtgacttaaatgaagtattc |
10746706 |
T |
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| Q |
308 |
cttcttcttcccatagcaccttgattcagccgagtcatattctcctccatcgtatgttctttttagtttgaatacttcaatcacttcgcatttcttcttg |
407 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10746705 |
cttcttcttcccatagcaccttgattcagccgagacatattctcctccaccgtatgttctttttagtttgaaaacttcaatcacttcgcatttcttcttg |
10746606 |
T |
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| Q |
408 |
atcaagtaaatcaatgtctttctagtgaaatcatctaggaaagacacaatacttgt |
463 |
Q |
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| T |
10746605 |
atcaagtaaatcaatgtctttctagtgaaatcatctaggaaagacacaatacttgt |
10746550 |
T |
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