View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_low_15 (Length: 472)
Name: NF3537_low_15
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Original strand, 42471226 - 42471693
Alignment:
| Q |
1 |
taaggaagataaaaattcatatactcatcagtctccttgattaagcccagctacgacaaggctcttcatgacaaatgataaacaagcccccatcaataat |
100 |
Q |
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| T |
42471226 |
taaggaagataaaaattcatatactcatcagtctccttgattaagcccagctacgacaaggctcttcatgacaaatgataaacaagcccccatcaataat |
42471325 |
T |
|
| Q |
101 |
ttgtgtttcggtagatgatgaattaacaagcaaattaaggtccaacataattgacaactgttgcatgataatttgtatgtggcagggaaactgtggcaaa |
200 |
Q |
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| T |
42471326 |
ttgtgtttcggtagatgatgaattaacaagcaaattaaagtccaacataattgacaactgttgcatgataatttgtatgtggcagggaaactgtggcaaa |
42471425 |
T |
|
| Q |
201 |
ttactgcaaagaagttagggaattggggttgagaatagaagaatacatatcagagagcttgggcctagaaaaagattacttaaggaatgctttaggtgaa |
300 |
Q |
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| T |
42471426 |
ttactgcaaagaagttagggaattggggttgagaatagaagaatacatatcagagagcttgggcctagaaaaagattacttaaggaatgctttaggtgaa |
42471525 |
T |
|
| Q |
301 |
caagggcagcacatggcagtgaattactatccaccatgcccacaaccagaacttacttatggattgccagggcatacagacccaactgcacttacaattc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42471526 |
caagggcagcacatggcagtgaattactatccaccatgcccacaaccagaacttacttatggattgccagggcatacagacccaaatgcacttacaattc |
42471625 |
T |
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| Q |
401 |
tactccatgatcttcatgttgctggcctacgagtcctcaaagctggcaagtggcttgctcttaaccca |
468 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |
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| T |
42471626 |
tactccaagatcttcatgttgctggcctacaagtcctcaaagatggcaagtggcttgctattaaccca |
42471693 |
T |
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