View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_low_16 (Length: 455)
Name: NF3537_low_16
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 11 - 439
Target Start/End: Original strand, 6193956 - 6194386
Alignment:
| Q |
11 |
cagagaaagaatgtgtgtgttgattgatcaatacagtcttacaatgtcatgtcatatcaattccacatttaaatgaattaaccatttaactattctttga |
110 |
Q |
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| T |
6193956 |
cagagaaagaatgtgtgtgttgattgatcaatacagtcttacaatgtcatgtcatatcaattccacatttatctgaattaaccatttaactattctt-ga |
6194054 |
T |
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| Q |
111 |
actggaaatatgtattgcctcttatagcaactatttttgtctttcactctctctcactcacacctttttccatgcaaactttcacagtcattatcacatt |
210 |
Q |
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| T |
6194055 |
actggaaatatgtattgcctcttatagcaactatttttgtcattcactctctctcactcacacctttttccatgcaaactttcacagtcattatcacatt |
6194154 |
T |
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| Q |
211 |
atcaatttttagcaacttaaaggcaacagttttggttttttctttgcagctttcaactgctgacac---nnnnnnnnntgagatgcttagaattaacttt |
307 |
Q |
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| T |
6194155 |
atcaatttttagcaacttaaaggcaacagttttggttttttctttgcagctttcaactgctgacacaaaaaaataatatgagatgcttagaattaacttt |
6194254 |
T |
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| Q |
308 |
acattcttctcctttgccatcaccacaatttaagaaagtggatcttacccttttcaattctctccaaaaaatcaaatctttgcaagtccattttgctctt |
407 |
Q |
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| T |
6194255 |
acattcttctcctttgccatcaccacaatttaagaaagtggatcttacccttttcaattctctccaaaaaatcaaatctttgcatgtccattttgctctt |
6194354 |
T |
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| Q |
408 |
tgtctaagattaaggttgtattagtcaaacat |
439 |
Q |
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| T |
6194355 |
tgtctaagattaaggttgtattagtcaaacat |
6194386 |
T |
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