View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_low_17 (Length: 451)
Name: NF3537_low_17
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_low_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 12 - 451
Target Start/End: Original strand, 40115650 - 40116089
Alignment:
| Q |
12 |
atcatcaagagtattagtgatgtggtttgtagcgccggaatcaaggatccaatctggctcacccataaaaggagtatgtgtagcagaatgggcagatgga |
111 |
Q |
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| T |
40115650 |
atcatcaagagtattagtgatgtggtttgtagcgccggaatcaaggatccaatctggctcacccataaaaggagtatgtgtagcagaatgggcagatgga |
40115749 |
T |
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| Q |
112 |
cgtggttgatttttggatggataaccatgaagtttgtagcacgttttggcagtgtgtccagatttgtcccagaattgacaagtcgttttcttagactggc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40115750 |
cgtggttgatttttggatggataaccatgaagtttgtagcacgttttggaagtgtgtccagatttgtcacagaattgacaagtcgttttcttagactggc |
40115849 |
T |
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| Q |
212 |
ctggtgaaacagatctgttgggtgaagagtaattgccatgattaggtgcatagccccgtttggaagtagcttgtttacctctgtatgcagcatgtgcagt |
311 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40115850 |
ctggtgaaacagatctgttgggtgaagagtaatttccatgattaggtgcatagccccgtttggaagtagcttgtttacctctgtatgcagcatgtgcagt |
40115949 |
T |
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| Q |
312 |
aagtactggagcagattcatcatcacgttgcagaacattttcatagtccacaagtagatcatgaagctcagcaaaggctatgtgattctcacgcgtacga |
411 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
40115950 |
aagtactggagcagattcatcttcacgttgcagaacattttcatagtccataagtagatcatgaagctcaacaaaggctatgggattctcacgcgtacga |
40116049 |
T |
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| Q |
412 |
agggcagcagaaacttctttgtactcagatccaagcccat |
451 |
Q |
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| T |
40116050 |
agggcagcagaaacttctttgtactcagatccaagcccat |
40116089 |
T |
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