View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3537_low_18 (Length: 445)
Name: NF3537_low_18
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_low_18 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 42169306 - 42169572
Alignment:
| Q |
1 |
gtgaacatggctgagttacttgagaagcagttagcttcagagttgtcaaagatgtcattagaagaagctttcactcttgctcgtgctttcagccattatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42169306 |
gtgaacatggctgagttacttgagaagcagttagcttcagatttgtcaaagatgtcattagaagaagctttcactcttgctcgtgctttcagccattatc |
42169405 |
T |
|
| Q |
101 |
ttactatgatgggtatagctgaaactcaccataggtaat-aataatccatggctacac--------attatttgttggtaattaatactactttccaaat |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
42169406 |
ttactatgatgggtatagctgaaactcaccataggtaataaataatccatggctacactaactctgattatttgttggtaattaatattactttccaaat |
42169505 |
T |
|
| Q |
192 |
ttcatttttgaattcacttattcaagcttatctagtgacataagcacttttataaccgtttatgaga |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42169506 |
ttcatttttgaattcacttattcaagcttatctagtgacataagcacttttataaccgtttatgaga |
42169572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 256 - 432
Target Start/End: Original strand, 42169655 - 42169831
Alignment:
| Q |
256 |
agaaataacttatagataagtgaatatcatgataagtccttatgctatgaggctaattaagttgtttatccaaacagggcctacgtagggtaatggtaat |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42169655 |
agaaataacttatagataagtgaatatcatgatgagtccttatgctatgaggctaattaagttgtttatccaaacagggcctacgtagggtaatggtaat |
42169754 |
T |
|
| Q |
356 |
ctctaacagaaattacattttcacagggttcgtaaaggagggaatatggcacaaatttcaaaatcttgtgatgatgt |
432 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42169755 |
ctctaacagaaattacatgttcacagggttcgtaaaggagggaatatggcacaaatttcaaaatcttgtgatgatgt |
42169831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 338
Target Start/End: Complemental strand, 48064241 - 48064182
Alignment:
| Q |
281 |
atcatgataagtccttatgctatgag--gctaattaagttgtttatccaaacagggccta |
338 |
Q |
| |
|
||||||||||| |||||||||| || || |||||||||||||||||||||| |||||| |
|
|
| T |
48064241 |
atcatgataagggcttatgctataagctgcaaattaagttgtttatccaaacatggccta |
48064182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 21686115 - 21686047
Alignment:
| Q |
1 |
gtgaacatggctgagttacttgagaagcagttagcttcagagttgtcaaagatgtcattagaagaagct |
69 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21686115 |
gtgaacatggctgagttaattgagaagcagttagcttcagagttgtcaaagatgtctttagaagaagct |
21686047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 7725600 - 7725551
Alignment:
| Q |
93 |
ccattatcttactatgatgggtatagctgaaactcaccataggtaataat |
142 |
Q |
| |
|
||||||||||||| ||| | ||||||||||||||||||||||||||||| |
|
|
| T |
7725600 |
ccattatcttactgtgactgatatagctgaaactcaccataggtaataat |
7725551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 338
Target Start/End: Original strand, 5620261 - 5620290
Alignment:
| Q |
309 |
taattaagttgtttatccaaacagggccta |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5620261 |
taattaagttgtttatccaaacagggccta |
5620290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 333841 - 333947
Alignment:
| Q |
22 |
gagaagcagttagcttcagagttgtcaaagatgtcattagaagaagctttcactcttgctcgtgctttcagccattatcttactatgatgggtatagctg |
121 |
Q |
| |
|
||||||||||| ||||||||||| || |||||| |||||||||||| || ||||||||||| ||||| || ||||||||||||||| | ||||||| |
|
|
| T |
333841 |
gagaagcagttggcttcagagttatccaagatgaacttagaagaagctcaaacacttgctcgtgcattcagtcactatcttactatgatgagcatagctg |
333940 |
T |
|
| Q |
122 |
aaactca |
128 |
Q |
| |
|
||||||| |
|
|
| T |
333941 |
aaactca |
333947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 338
Target Start/End: Complemental strand, 17823068 - 17823012
Alignment:
| Q |
284 |
atgataagtccttatgctatgag--gctaattaagttgtttatccaaacagggccta |
338 |
Q |
| |
|
|||||||| |||||||||||||| || ||||||| |||||||||||||| |||||| |
|
|
| T |
17823068 |
atgataagcccttatgctatgagctgcaaattaagctgtttatccaaacaaggccta |
17823012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 337
Target Start/End: Complemental strand, 30090160 - 30090132
Alignment:
| Q |
309 |
taattaagttgtttatccaaacagggcct |
337 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
30090160 |
taattaagttgtttatccaaacagggcct |
30090132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 338
Target Start/End: Complemental strand, 14955625 - 14955597
Alignment:
| Q |
310 |
aattaagttgtttatccaaacagggccta |
338 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14955625 |
aattaagttgtttatccaaacagggccta |
14955597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 337
Target Start/End: Original strand, 37308232 - 37308260
Alignment:
| Q |
309 |
taattaagttgtttatccaaacagggcct |
337 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
37308232 |
taattaagttgtttatccaaacagggcct |
37308260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University