View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3537_low_2 (Length: 789)
Name: NF3537_low_2
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_low_2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 681; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 681; E-Value: 0
Query Start/End: Original strand, 18 - 772
Target Start/End: Original strand, 40116066 - 40116822
Alignment:
| Q |
18 |
ctttgtactcagatccaagcccattcagagcatgaataaccaagtcatcatcatcaacaggtttgttaatgacagcaagctcatcagagattgatttaat |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
40116066 |
ctttgtactcagatccaagcccattgagagcatgaataaccaagtcatcatcatcaacaggtttgttgatgacagcaagctcatcagagattgatttaat |
40116165 |
T |
|
| Q |
118 |
accttgtaggtattcagaaactgatttggagccctttgttgtacaagacaggcgctccttaagatgcataatgcgtgatctagtcttgctagcaaacatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40116166 |
accttgtaggtattcagaaactgatttggagccctttgttgtacgagacaggcgctccttaagatgcataatgcgtgatctagtcttgctagcaaacatt |
40116265 |
T |
|
| Q |
218 |
ttcttgagggtatcccaagcttgttgagatgttttcacattgccaagagcagttatgatgctctaatcgacagatgtgatgatagcgtgcaagatcaatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
40116266 |
ttcttgagggtatcccaagcttgttgagatgttttcacattgccaagagcagttatgatgctctgatcgacagatgtgatgatagcgtgcaagatcaatt |
40116365 |
T |
|
| Q |
318 |
gatcttgtcttgtccagtaattaaaatctggatcagtttgggtaggacacggttttgtgccatcaatgaaccctttaagatcatatccaatgaaaagagc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
40116366 |
gatcttgtcttgtccagtaattaaaatctggatcagtttgggtaggacacggttttgtgccatagatgaaccctttaagatcatatccaatgaaaagagc |
40116465 |
T |
|
| Q |
418 |
attcatttggacattccaagctgggtaatttgtacttttgagtttaagtgaatgttgggtattgaggacagttacagtgttggttccaaccatgaaactg |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40116466 |
attcatttggacattccaagctgggtaatttgtacttttgagtttaagtgaatgttgggtattgaggacagttacagtgttggttccaaccatgaaactg |
40116565 |
T |
|
| Q |
518 |
caaccattgttgttgttatttgtggaagagctattgttattagtatttgcggaagacatggtgaaa-ggggggnnnnnnnntgcacaggttaaggatcgt |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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|
| T |
40116566 |
caaccattgttgttgttatttgtggaagagctattgttattagtatttgcggaagacatggtgaaagggggggaaaaaaaatgcacaggttaaggatcgt |
40116665 |
T |
|
| Q |
617 |
atggctgttaagctaaaaggcagatgataccatatagagaataatagagaatataatgaaatgtttttgaattatt-tgataagtttcattagcctctct |
715 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
40116666 |
atggctgttaagctaaaaggcctctgataccatatagagaataatagagaatataatgaaatgtttttgaattattctgataagtttcattagcctctct |
40116765 |
T |
|
| Q |
716 |
atttatagttagagatgaccgaatacattaaagagcaattatattcttcatctatac |
772 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40116766 |
atttatagttagagatgaccgaatacattaaagagcaattatattcttcatctatac |
40116822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 648 - 772
Target Start/End: Original strand, 40093987 - 40094112
Alignment:
| Q |
648 |
atatagagaataatagagaatataatgaaatgtttttgaattatt-tgataagtttcattagcctctctatttatagttagagatgaccgaatacattaa |
746 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40093987 |
atatagagaataatagagaatataatgaaatgtttttgaattattctgataagttttattagcctctctatttatagttagagatgaccgaatacattaa |
40094086 |
T |
|
| Q |
747 |
agagcaattatattcttcatctatac |
772 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
40094087 |
agagcaattatattcttcatctatac |
40094112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 9e-60; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 648 - 772
Target Start/End: Original strand, 19990613 - 19990738
Alignment:
| Q |
648 |
atatagagaataatagagaatataatgaaatgtttttgaattattt-gataagtttcattagcctctctatttatagttagagatgaccgaatacattaa |
746 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19990613 |
atatagagaataatagagaatataatgaaatgtttttgaattattttgataagtttcattagcctctctatttatagttagagatgaccgaatacattaa |
19990712 |
T |
|
| Q |
747 |
agagcaattatattcttcatctatac |
772 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
19990713 |
agagcaattatattcttcatctatac |
19990738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 660 - 772
Target Start/End: Original strand, 19292371 - 19292484
Alignment:
| Q |
660 |
atagagaatataatgaaatgtttttgaattat-ttgataagtttcattagcctctctatttatagttagagatgaccgaatacattaaagagcaattata |
758 |
Q |
| |
|
||||||| |||||||||||| ||||||||| | |||| ||||||||||||||||||||||||| | |||||||||||||||| ||||||||| | | ||| |
|
|
| T |
19292371 |
atagagagtataatgaaatgattttgaattgtattgagaagtttcattagcctctctatttatggatagagatgaccgaatatattaaagagtattgata |
19292470 |
T |
|
| Q |
759 |
ttcttcatctatac |
772 |
Q |
| |
|
| ||||| |||||| |
|
|
| T |
19292471 |
tgcttcagctatac |
19292484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 660 - 772
Target Start/End: Original strand, 19298302 - 19298415
Alignment:
| Q |
660 |
atagagaatataatgaaatgtttttgaattat-ttgataagtttcattagcctctctatttatagttagagatgaccgaatacattaaagagcaattata |
758 |
Q |
| |
|
||||||| |||||||||||| ||||||||| | |||| ||||||||||||||||||||||||| | |||||||||| ||||||||||||||| | | ||| |
|
|
| T |
19298302 |
atagagagtataatgaaatgattttgaattgtattgagaagtttcattagcctctctatttatggatagagatgactgaatacattaaagagtattaata |
19298401 |
T |
|
| Q |
759 |
ttcttcatctatac |
772 |
Q |
| |
|
| ||||| |||||| |
|
|
| T |
19298402 |
tgcttcagctatac |
19298415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 1e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 649 - 761
Target Start/End: Original strand, 26103275 - 26103388
Alignment:
| Q |
649 |
tatagagaataatagagaatataatgaaatgtttttgaattat-ttgataagtttcattagcctctctatttatagttagagatgaccgaatacattaaa |
747 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26103275 |
tatagagaataatagagaatataatgaaatgtttttgaattatgttgataagtttcattagcctctctatttatagttagagatgaccgaatacattaaa |
26103374 |
T |
|
| Q |
748 |
gagcaattatattc |
761 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
26103375 |
gagcaattatattc |
26103388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 649 - 720
Target Start/End: Complemental strand, 6407915 - 6407844
Alignment:
| Q |
649 |
tatagagaataatagagaatataatgaaatgtttttgaattatttgataagtttcattagcctctctattta |
720 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6407915 |
tatagagaataatagagaatataatgaaatgtttttgaattatttgataagtttcattagcctctctattta |
6407844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 209 - 426
Target Start/End: Original strand, 9039282 - 9039499
Alignment:
| Q |
209 |
gcaaacattttcttgagggtatcccaagcttgttgagatgttttcacattgccaagagcagttatgatgctctaatcgacagatgtgatgatagcgtgca |
308 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| || | ||| |||||||| | | || |||||||| | ||||||||||||||| ||||| || | |
|
|
| T |
9039282 |
gcaaacatcttcttgagagtatcccaagcttgttgggaggatttgacattgcctaatgtcgtgatgatgctatgatcgacagatgtgataatagcatgta |
9039381 |
T |
|
| Q |
309 |
agatcaattgatcttgtcttgtccagtaattaaaatctggatcagtttgggtaggacacggttttgtgccatcaatgaaccctttaagatcatatccaat |
408 |
Q |
| |
|
|| | ||| || |||||||||||||| || |||||||||| |||| || ||| ||| |||||| |||| || || ||| | || ||||||||||| |
|
|
| T |
9039382 |
gtatgagttggtcctgtcttgtccagtagttgtaatctggatctgttttggcagggcacaattttgtaccattgataaaacctgtgaggtcatatccaat |
9039481 |
T |
|
| Q |
409 |
gaaaagagcattcatttg |
426 |
Q |
| |
|
||| || ||||||||||| |
|
|
| T |
9039482 |
gaatagtgcattcatttg |
9039499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 3016569 - 3016353
Alignment:
| Q |
18 |
ctttgtactcagatccaagcccattcagagcatgaataaccaagtcatcatcatcaacaggtttgttaatgacagcaagctcatcagagattgatttaat |
117 |
Q |
| |
|
||||| |||| || ||||| ||||| |||||||||| || | ||||||||||||| ||| ||||| |||| ||||| |||||||| |||| ||| || |
|
|
| T |
3016569 |
ctttgaactcggacccaaggccattgggagcatgaatcacgagatcatcatcatcaataggcttgttgatgattgcaagttcatcagaaattgctttgat |
3016470 |
T |
|
| Q |
118 |
accttgtaggtattcagaaactgatttggagccctttgttgtacaagacaggcgctccttaagatgcataatgcgtgatctagtcttgctagcaaacatt |
217 |
Q |
| |
|
|||| ||||||||||| || |||||||| || || | || | || | ||||| ||||||||||||||||| | ||| || ||||| ||||||||| |
|
|
| T |
3016469 |
ggcttggaggtattcagagacggatttggaacctttagaggttcgagttaaccgctctttaagatgcataatgcgagctcttgttttgcttgcaaacatt |
3016370 |
T |
|
| Q |
218 |
ttcttgagggtatccca |
234 |
Q |
| |
|
|| || ||| ||||||| |
|
|
| T |
3016369 |
ttgttaaggatatccca |
3016353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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