View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_low_20 (Length: 417)
Name: NF3537_low_20
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 42562985 - 42563382
Alignment:
| Q |
1 |
aattaaattgaaacaattactatagtttagaacggataatagctaaggcaaattgcaaaagctgcagttagtagtcaattgaaaccagataatgtcatga |
100 |
Q |
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| T |
42562985 |
aattaaattgaaacaattactatagtttagaacggataatagctaaggcaaattgcaaaagctgcagttagtagtcaattgaaatcagataatgtcatga |
42563084 |
T |
|
| Q |
101 |
acatccatatacacacaaaaagcttcacaaacaagttattaaatgaatgaaaacatacatatcaaaggaaaattagctagacatagggagaagaaaaata |
200 |
Q |
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| T |
42563085 |
acatccatatacacacaaaaagcatcacaaacaagttattaaatgaatgaaaacatacatatcaaaggaaaattagctagacatagagagaagaaaaata |
42563184 |
T |
|
| Q |
201 |
acatgaaaaattaaaataactatgatgacattgctcctcgactctcattgccgtgcaagtacaaccttctcttgtggtttattcgaaaccttaactttgt |
300 |
Q |
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| T |
42563185 |
acatgaaaaattaaaataactatgatcacattgctcctcgactctcattgccgtg------caaccttctcttgtggtttattcgaaaccttaactttgt |
42563278 |
T |
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| Q |
301 |
gtgtcttctatgctccc---ctaggatgaaataataattgtgttgcttgcctcttgtatttattggcatgttttacttaatttctaaacaacttagggga |
397 |
Q |
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| T |
42563279 |
gtgtcttctatgctcccctactaggatgaaataataattgtgttgcttgcctcttgtatttattggcatgtttgacttaatttctaaacaacttagggga |
42563378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 380
Target Start/End: Original strand, 16648975 - 16649021
Alignment:
| Q |
335 |
ttgtgttgcttgcctcttgtatttattggcatgt-tttacttaattt |
380 |
Q |
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| T |
16648975 |
ttgtgttgcttgcctcttgtatttataggcatgtcttgacttaattt |
16649021 |
T |
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