View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_low_24 (Length: 393)
Name: NF3537_low_24
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 385
Target Start/End: Original strand, 3414616 - 3414983
Alignment:
| Q |
18 |
aaagagaggtcatagagatatttggtttagatagctacacaaatttgtctctcgatcctaaaatgcttactttagcatgaaagggtcttgaaagatattt |
117 |
Q |
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| T |
3414616 |
aaagagaggtcagagagatatttggtttagataactacacaaatttgtctctcgatcctaaaatgcttactttagcatgaaagggtcttgaaagatattt |
3414715 |
T |
|
| Q |
118 |
gcttaatttaacacaaaccaatctagaatattgatttgaaacagaccctttcaagtttttgagatcgaactaggtcaagaacgttggtggagcagcggtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3414716 |
gcttaatttaacacaaaccaatctagaatattgatttgaaacagaccctttcaagtttttgagatcgaactaggtcaagaacattggtggagcagcggtt |
3414815 |
T |
|
| Q |
218 |
taaccacaccaactgttaacccgaaacaacccacactaatcaatccactacatgaaaccccacccaaatagttgcaatgacaaacgatttaacggaaact |
317 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3414816 |
taaccacaccaacggttaacccaaaacaacccacactaatcaatccactacacgaaaccccacccaaatagttgcaatgacaaacgatttaacggaaact |
3414915 |
T |
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| Q |
318 |
agtagcaaatatcagtgaatcagaacaagatgtcatagatcatgagccaacataaacgataacctatg |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3414916 |
agtagcaaatatcagtgaatcagaacaagatgtcatagatcatgagccaacataaacgataacctatg |
3414983 |
T |
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