View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3537_low_27 (Length: 371)

Name: NF3537_low_27
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3537_low_27
NF3537_low_27
[»] chr7 (30 HSPs)
chr7 (193-346)||(28197981-28198134)
chr7 (192-320)||(35116848-35116975)
chr7 (190-314)||(36721167-36721291)
chr7 (221-351)||(18797765-18797895)
chr7 (216-328)||(7936027-7936139)
chr7 (216-319)||(30080125-30080227)
chr7 (240-349)||(35494635-35494744)
chr7 (199-304)||(40198825-40198930)
chr7 (189-340)||(8902945-8903097)
chr7 (232-322)||(41332449-41332539)
chr7 (227-350)||(12837866-12837990)
chr7 (230-325)||(10316037-10316132)
chr7 (231-316)||(6727604-6727688)
chr7 (184-317)||(46578947-46579080)
chr7 (225-316)||(7399854-7399945)
chr7 (226-328)||(28517762-28517865)
chr7 (195-258)||(30080221-30080285)
chr7 (239-326)||(30824928-30825015)
chr7 (242-329)||(43189838-43189926)
chr7 (250-349)||(30413332-30413431)
chr7 (240-299)||(35720989-35721048)
chr7 (214-325)||(38663647-38663758)
chr7 (248-322)||(16831285-16831359)
chr7 (267-353)||(18662275-18662361)
chr7 (303-349)||(24516995-24517041)
chr7 (278-328)||(29559213-29559263)
chr7 (249-347)||(38140301-38140399)
chr7 (239-299)||(4232768-4232828)
chr7 (267-319)||(12101378-12101430)
chr7 (295-323)||(40199106-40199134)
[»] chr2 (20 HSPs)
chr2 (194-344)||(39575445-39575595)
chr2 (194-326)||(3855940-3856072)
chr2 (239-312)||(3773037-3773110)
chr2 (193-342)||(1852823-1852972)
chr2 (194-323)||(37534415-37534545)
chr2 (193-322)||(306151-306279)
chr2 (231-298)||(6913416-6913482)
chr2 (245-343)||(42878705-42878801)
chr2 (239-320)||(12880120-12880201)
chr2 (260-349)||(33058771-33058859)
chr2 (279-333)||(29735718-29735772)
chr2 (240-352)||(752114-752226)
chr2 (225-330)||(40141933-40142038)
chr2 (244-318)||(41311737-41311811)
chr2 (194-322)||(40083450-40083579)
chr2 (240-316)||(4640222-4640298)
chr2 (274-350)||(11091435-11091511)
chr2 (288-324)||(11189188-11189224)
chr2 (274-346)||(39792061-39792133)
chr2 (231-319)||(43651470-43651558)
[»] chr4 (29 HSPs)
chr4 (194-325)||(4197190-4197322)
chr4 (200-335)||(13414248-13414383)
chr4 (194-313)||(33873860-33873979)
chr4 (194-296)||(15501413-15501517)
chr4 (231-316)||(26184607-26184692)
chr4 (241-334)||(39946413-39946506)
chr4 (240-353)||(36832780-36832890)
chr4 (221-329)||(43209113-43209221)
chr4 (199-343)||(22677507-22677651)
chr4 (231-311)||(32931505-32931585)
chr4 (239-338)||(6317014-6317112)
chr4 (240-299)||(38868878-38868937)
chr4 (259-349)||(4068359-4068449)
chr4 (274-340)||(44369076-44369142)
chr4 (247-321)||(48051717-48051791)
chr4 (215-316)||(36185562-36185663)
chr4 (280-352)||(3167124-3167196)
chr4 (249-332)||(25234515-25234599)
chr4 (240-299)||(14193863-14193922)
chr4 (225-319)||(27915240-27915334)
chr4 (276-322)||(31917681-31917727)
chr4 (234-319)||(32536869-32536954)
chr4 (244-333)||(51277994-51278083)
chr4 (234-319)||(3775370-3775455)
chr4 (217-258)||(26660637-26660678)
chr4 (240-317)||(26683635-26683712)
chr4 (231-335)||(6167838-6167942)
chr4 (239-335)||(38547444-38547540)
chr4 (248-327)||(39144230-39144309)
[»] chr1 (27 HSPs)
chr1 (193-350)||(17630247-17630402)
chr1 (220-326)||(39527013-39527119)
chr1 (193-319)||(15826215-15826340)
chr1 (190-330)||(2570975-2571114)
chr1 (187-331)||(7444898-7445042)
chr1 (217-340)||(50015530-50015654)
chr1 (216-330)||(27262727-27262842)
chr1 (193-322)||(30984481-30984611)
chr1 (240-329)||(34620605-34620694)
chr1 (305-347)||(41885572-41885614)
chr1 (221-293)||(16966544-16966616)
chr1 (276-343)||(1905712-1905779)
chr1 (196-288)||(4488769-4488857)
chr1 (225-320)||(24980816-24980911)
chr1 (225-320)||(24989574-24989669)
chr1 (215-325)||(52698444-52698554)
chr1 (230-355)||(34040745-34040869)
chr1 (194-333)||(1411671-1411809)
chr1 (278-322)||(26923177-26923221)
chr1 (234-322)||(47235508-47235596)
chr1 (193-343)||(36995204-36995355)
chr1 (243-326)||(51972064-51972147)
chr1 (276-322)||(51139291-51139337)
chr1 (227-316)||(6948197-6948285)
chr1 (274-319)||(38332974-38333019)
chr1 (239-348)||(41048012-41048121)
chr1 (267-343)||(15647259-15647335)
[»] chr3 (17 HSPs)
chr3 (193-326)||(31375490-31375623)
chr3 (193-305)||(48600599-48600709)
chr3 (240-343)||(15985279-15985382)
chr3 (191-355)||(29577231-29577395)
chr3 (239-330)||(31830174-31830265)
chr3 (277-349)||(50173432-50173504)
chr3 (234-324)||(31732064-31732155)
chr3 (244-343)||(42983913-42984012)
chr3 (248-343)||(45153551-45153645)
chr3 (199-289)||(32978065-32978155)
chr3 (267-349)||(54413640-54413724)
chr3 (276-348)||(11434804-11434876)
chr3 (242-340)||(24487773-24487872)
chr3 (234-317)||(31844964-31845047)
chr3 (225-317)||(50037194-50037287)
chr3 (274-322)||(36924600-36924647)
chr3 (280-340)||(54404311-54404371)
[»] chr8 (22 HSPs)
chr8 (193-326)||(7176484-7176617)
chr8 (191-346)||(45185423-45185577)
chr8 (216-330)||(6938969-6939083)
chr8 (221-316)||(38842891-38842986)
chr8 (249-333)||(29602039-29602123)
chr8 (187-340)||(32615819-32615972)
chr8 (239-298)||(472018-472077)
chr8 (193-347)||(11766452-11766607)
chr8 (310-352)||(22575804-22575846)
chr8 (279-328)||(39082528-39082577)
chr8 (240-317)||(42350422-42350499)
chr8 (239-325)||(17106201-17106287)
chr8 (300-355)||(42447420-42447475)
chr8 (234-340)||(7859095-7859201)
chr8 (240-326)||(14955209-14955295)
chr8 (233-315)||(42964814-42964896)
chr8 (234-343)||(13521678-13521787)
chr8 (234-343)||(13611213-13611322)
chr8 (193-326)||(31087061-31087194)
chr8 (303-344)||(32202993-32203034)
chr8 (240-319)||(39900259-39900337)
chr8 (231-346)||(29931099-29931215)
[»] chr5 (19 HSPs)
chr5 (192-322)||(5682320-5682450)
chr5 (193-330)||(1863093-1863230)
chr5 (231-317)||(4822528-4822614)
chr5 (202-298)||(19608774-19608870)
chr5 (260-350)||(950617-950707)
chr5 (193-293)||(26449260-26449360)
chr5 (225-320)||(38328652-38328747)
chr5 (241-352)||(8611721-8611832)
chr5 (274-321)||(27695128-27695175)
chr5 (276-326)||(9765011-9765061)
chr5 (230-350)||(9857801-9857920)
chr5 (240-299)||(14688761-14688820)
chr5 (279-322)||(23245412-23245455)
chr5 (231-340)||(42035766-42035876)
chr5 (244-341)||(6662097-6662194)
chr5 (234-326)||(844736-844828)
chr5 (302-350)||(7112016-7112063)
chr5 (215-291)||(24111558-24111634)
chr5 (248-352)||(34103305-34103408)
[»] scaffold0006 (1 HSPs)
scaffold0006 (196-327)||(159130-159261)
[»] chr6 (12 HSPs)
chr6 (239-343)||(21273638-21273743)
chr6 (218-326)||(6067499-6067607)
chr6 (280-314)||(22720440-22720474)
chr6 (218-319)||(30775224-30775325)
chr6 (1-58)||(32870385-32870442)
chr6 (242-353)||(29283202-29283313)
chr6 (231-335)||(30456773-30456877)
chr6 (276-319)||(9752633-9752676)
chr6 (240-322)||(31597514-31597597)
chr6 (231-355)||(17590259-17590384)
chr6 (284-320)||(24265215-24265251)
chr6 (234-334)||(30326704-30326804)
[»] scaffold0954 (1 HSPs)
scaffold0954 (216-327)||(47-158)


Alignment Details
Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 193 - 346
Target Start/End: Complemental strand, 28198134 - 28197981
Alignment:
Q  193 cacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaa 292  Q
    |||||||||||||||  ||| ||||||||||||||| |||||||| ||||||| ||||||||||||||||||| |||||| | |||||||| ||||||||    
T  28198134 cacttgtttagaagtccaaagaagaaactttttcttggaaattgtgtattcaagacattgaaacttcaaaaagaaactttttctacataaattttataaa 28198035  T
Q  293 ttattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataa 346  Q
    |||||| |||||||||||||||||||||||| |||||| |||| ||||||||||    
T  28198034 ttatttcctcttttgaatccttaacaagtgcactaagggcacttgttagcataa 28197981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 192 - 320
Target Start/End: Original strand, 35116848 - 35116975
Alignment:
Q  192 acacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataa 291  Q
    |||||||||||  ||| |||| ||||||||||| || | || |||| ||||||| |||||||||||||||||||||| ||| | ||||||||||||||||    
T  35116848 acacttgtttatgagtcaaaagaagaaactttt-ctcacaatttgtgtattcaatacattgaaacttcaaaaaggaaatttttctacataaaatttataa 35116946  T
Q  292 attattttctcttttgaatccttaacaag 320  Q
    ||||||| || ||||||||||||||||||    
T  35116947 attatttccttttttgaatccttaacaag 35116975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 190 - 314
Target Start/End: Complemental strand, 36721291 - 36721167
Alignment:
Q  190 ggacacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttat 289  Q
    |||||||||||||||||| |||| |||||||| ||||||||||| ||| ||||||||||||| ||| || ||||| ||||||| | ||||||||| ||||    
T  36721291 ggacacttgtttagaagtcaaaagaagaaactctttcttagaaaatgtgtattcaacacatttaaatttaaaaaaagaactttttatacataaaacttat 36721192  T
Q  290 aaattattttctcttttgaatcctt 314  Q
    || | |||| |||||||||||||||    
T  36721191 aagtcatttcctcttttgaatcctt 36721167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 221 - 351
Target Start/End: Complemental strand, 18797895 - 18797765
Alignment:
Q  221 tttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaag 320  Q
    ||||| || |||||||| ||||||||  |||||||||| ||||| |||| ||  ||||||||||||||||||| ||||||| ||||||||||||||| ||    
T  18797895 ttttttttggaaattgtgtattcaacgtattgaaacttaaaaaaagaacatttattacataaaatttataaatcattttcttttttgaatccttaactag 18797796  T
Q  321 tgccctaaggacactcgttagcataacccta 351  Q
    || | ||||  ||||||||||||||||||||    
T  18797795 tgtcgtaagagcactcgttagcataacccta 18797765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 216 - 328
Target Start/End: Original strand, 7936027 - 7936139
Alignment:
Q  216 gaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatcctta 315  Q
    |||||||||| || | |||||| |||||||||||||||||||||||||| ||||| | | | ||||| |||||||||  |||| ||||||||||||||||    
T  7936027 gaaacttttttttgggaattgtgtattcaacacattgaaacttcaaaaatgaactatttctgcataagatttataaaccatttcctcttttgaatcctta 7936126  T
Q  316 acaagtgccctaa 328  Q
    |||||||||||||    
T  7936127 acaagtgccctaa 7936139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 216 - 319
Target Start/End: Complemental strand, 30080227 - 30080125
Alignment:
Q  216 gaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatcctta 315  Q
    |||||||||||||||||||| | ||||||||||||| ||||||  |||| ||||||| | |||||||||||| ||||||||||| ||| || ||||||||    
T  30080227 gaaactttttcttagaaattatgtattcaacacattaaaactt-taaaatgaactttttctacataaaatttctaaattattttttctcttaaatcctta 30080129  T
Q  316 acaa 319  Q
    ||||    
T  30080128 acaa 30080125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 240 - 349
Target Start/End: Complemental strand, 35494744 - 35494635
Alignment:
Q  240 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgtt 339  Q
    |||||| ||||||||| ||||||||| |||||| |||| ||||||||||| ||||||||  ||| |||||||||||||||  ||||| | ||||  ||||    
T  35494744 attcaaaacattgaaatttcaaaaagaaactttttttatataaaatttatgaattatttcttctattgaatccttaacaaacgccctcaagacaaccgtt 35494645  T
Q  340 agcataaccc 349  Q
    |||| |||||    
T  35494644 agcaaaaccc 35494635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 199 - 304
Target Start/End: Original strand, 40198825 - 40198930
Alignment:
Q  199 tttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattt 298  Q
    |||||||||  ||| |||||||||||| ||  ||||||| |||||||||| ||||||||| |||||| ||| || ||||||||| ||||| |||| ||||    
T  40198825 tttagaagtctaaagaagaaacttttttttgaaaattgtgtattcaacacgttgaaactttaaaaagtaacattttttacataagatttacaaataattt 40198924  T
Q  299 tctctt 304  Q
    ||||||    
T  40198925 tctctt 40198930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 340
Target Start/End: Original strand, 8902945 - 8903097
Alignment:
Q  189 aggacacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaac-ttcaaaaaggaactttatttacataaaattt 287  Q
    |||||||||| ||||||||| |||  | ||| ||| | |||||| |||| |||| |||  |||||| | || |||||| ||||||||||| |||||| ||    
T  8902945 aggacacttgattagaagttgaaattaaaaattttattttagaatttgtgtatttaacgtattgaagcattaaaaaagcaactttatttatataaaagtt 8903044  T
Q  288 ataaattattttctcttttgaatccttaacaagtgccctaaggacactcgtta 340  Q
    || |||| ||||   ||||||||| |||||||||| |||||||||||||||||    
T  8903045 atcaattgtttttatttttgaatctttaacaagtgtcctaaggacactcgtta 8903097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 322
Target Start/End: Complemental strand, 41332539 - 41332449
Alignment:
Q  232 aattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtg 322  Q
    |||||| |||| ||||  ||||||||| || || |||||||||||| ||||||||||||||||||||||| ||||  ||| ||||||||||    
T  41332539 aattgtatatttaacattttgaaactttaataaagaactttatttatataaaatttataaattattttcttttttagatcattaacaagtg 41332449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 227 - 350
Target Start/End: Complemental strand, 12837990 - 12837866
Alignment:
Q  227 ttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctctt-ttgaatccttaacaagtgccc 325  Q
    ||||||||| | || |||| |||||||||| | |||||| ||||| || |||||||||||||| ||||  ||||| || |||||||||||||||||| ||    
T  12837990 ttagaaattatgtaatcaagacattgaaacattaaaaagcaacttaatctacataaaatttatcaatt-gtttctattcttgaatccttaacaagtgtcc 12837892  T
Q  326 taaggacactc-gttagcataaccct 350  Q
    ||||||| ||| |||| |||||||||    
T  12837891 taaggaccctctgttaacataaccct 12837866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 325
Target Start/End: Complemental strand, 10316132 - 10316037
Alignment:
Q  230 gaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccc 325  Q
    |||||||| || ||||| |||||||| || ||||| |||| || | ||| |||||||||||||||||||  ||||||||| |||||||| ||||||    
T  10316132 gaaattgtgtaatcaacgcattgaaattttaaaaatgaacattttgtacttaaaatttataaattatttattcttttgaaaccttaacatgtgccc 10316037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 316
Target Start/End: Complemental strand, 6727688 - 6727604
Alignment:
Q  231 aaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaa 316  Q
    ||||||| ||||||||| |||||||||| | ||| ||| ||| | |||||||||||| ||||| |||||||||||||||| |||||    
T  6727688 aaattgtgtattcaacagattgaaacttaataaaagaattttttctacataaaattt-taaataattttctcttttgaattcttaa 6727604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 317
Target Start/End: Original strand, 46578947 - 46579080
Alignment:
Q  184 tctttaggacacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaa 283  Q
    ||||| || |||||||||||||||| ||| |||||||||||| ||| || |||| | ||||  ||||||||| || |||| | ||| || | | ||| ||    
T  46578947 tctttgggccacttgtttagaagtttaaagaagaaactttttattaaaatttgtgttttcactacattgaaaattaaaaatgaaacattttctccatgaa 46579046  T
Q  284 atttataaattattttctcttttgaatccttaac 317  Q
    ||| ||||||||||| || |||| ||||||||||    
T  46579047 attcataaattatttcctattttaaatccttaac 46579080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 225 - 316
Target Start/End: Original strand, 7399854 - 7399945
Alignment:
Q  225 tcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttc-tcttttgaatccttaa 316  Q
    |||| ||| |||| |||||||||||||||||| | |||||| |||||| || |||| ||||||||||||||||| | | ||||||||||||||    
T  7399854 tcttggaagttgtttattcaacacattgaaacattaaaaagtaacttttttaacat-aaatttataaattatttcctttttttgaatccttaa 7399945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 328
Target Start/End: Original strand, 28517762 - 28517865
Alignment:
Q  226 cttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttc-tcttttgaatccttaacaagtgcc 324  Q
    |||| ||||| | ||||||||  |||||||  | |||||| |||||| ||||||| |||||||  |||||||| | | ||||||||||||||||||||||    
T  28517762 cttaaaaattatatattcaacttattgaaagattaaaaagcaactttttttacatgaaatttaacaattatttccattttttgaatccttaacaagtgcc 28517861  T
Q  325 ctaa 328  Q
    ||||    
T  28517862 ctaa 28517865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 30080285 - 30080221
Alignment:
Q  195 cttgtttagaagttaaaacaagaaacttttt-cttagaaattgtctattcaacacattgaaactt 258  Q
    |||||||||||||| ||| || ||| ||||| |||||||||||| |||| |||||||||||||||    
T  30080285 cttgtttagaagtttaaagaataaatttttttcttagaaattgtgtatttaacacattgaaactt 30080221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 326
Target Start/End: Original strand, 30824928 - 30825015
Alignment:
Q  239 tattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctct-tttgaatccttaacaagtgccct 326  Q
    ||||||||||||||||| || |||||| |||||||| | ||||||| || ||||||| ||||| | |||||||| ||||| ||||||||    
T  30824928 tattcaacacattgaaaatttaaaaagtaactttatctgcataaaacttgtaaatta-tttctatatttgaatctttaactagtgccct 30825015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 329
Target Start/End: Original strand, 43189838 - 43189926
Alignment:
Q  242 tcaacacattgaaacttcaaaaaggaactttattt-acataaaatttataaattattttctcttttgaatccttaacaagtgccctaag 329  Q
    |||| ||||||||| || |||||| |||||| ||| ||||||||||||||||||| ||    ||||||||| ||||| |||||||||||    
T  43189838 tcaatacattgaaaatttaaaaagtaacttttttttacataaaatttataaattacttctatttttgaatcgttaactagtgccctaag 43189926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 349
Target Start/End: Original strand, 30413332 - 30413431
Alignment:
Q  250 ttgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataaccc 349  Q
    |||||||||  |||| ||||||| |  |||||||| ||||| ||||||| ||||||| ||| ||||| |||||| | ||| ||| | |||||||||||||    
T  30413332 ttgaaacttttaaaatgaactttttacacataaaacttatacattatttgctcttttaaatgcttaataagtgctcgaagaacattagttagcataaccc 30413431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 299
Target Start/End: Original strand, 35720989 - 35721048
Alignment:
Q  240 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattatttt 299  Q
    |||||||| ||||||| || |||||| |||||||| |||||||||||| |||| ||||||    
T  35720989 attcaacatattgaaagtttaaaaagtaactttatctacataaaatttgtaaactatttt 35721048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 325
Target Start/End: Original strand, 38663647 - 38663758
Alignment:
Q  214 aagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatcct 313  Q
    |||||| ||| | ||| ||||||| |||| ||  ||||||||||| |||||| |||||| | ||  |||||||||| ||||||||    ||||| |||||    
T  38663647 aagaaattttgttttaaaaattgtgtatttaatgcattgaaactttaaaaagtaactttttatatttaaaatttatcaattatttctatttttgtatcct 38663746  T
Q  314 taacaagtgccc 325  Q
    ||||||||||||    
T  38663747 taacaagtgccc 38663758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 322
Target Start/End: Original strand, 16831285 - 16831359
Alignment:
Q  248 cattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtg 322  Q
    |||| |||||| |||||| |||||| ||||  | |||||||| ||||||||||  ||||| ||||||||||||||    
T  16831285 cattaaaactttaaaaagtaactttttttatttgaaatttatcaattattttcatttttgtatccttaacaagtg 16831359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 353
Target Start/End: Complemental strand, 18662361 - 18662275
Alignment:
Q  267 aactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataaccctaat 353  Q
    |||||| | ||| |||||||||| ||| ||||||  ||||| ||||||||||||| ||||||  |||||  |||||| |||||||||    
T  18662361 aactttttctacttaaaatttatcaatgattttcatttttgtatccttaacaagtaccctaaaaacactttttagcaaaaccctaat 18662275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 24516995 - 24517041
Alignment:
Q  303 ttttgaatccttaacaagtgccctaaggacactcgttagcataaccc 349  Q
    |||| |||| |||||||||||| ||||||||||||||||||| ||||    
T  24516995 ttttaaatctttaacaagtgccttaaggacactcgttagcatgaccc 24517041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 328
Target Start/End: Original strand, 29559213 - 29559263
Alignment:
Q  278 cataaaatttataaattattttctcttttgaatccttaacaagtgccctaa 328  Q
    |||||||||||| ||||||||    ||||||||||||||||||||||||||    
T  29559213 cataaaatttatcaattatttatatttttgaatccttaacaagtgccctaa 29559263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 347
Target Start/End: Complemental strand, 38140399 - 38140301
Alignment:
Q  249 attgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataac 347  Q
    |||||||  |||||||| ||| || | |||||||||||||  |||| ||| ||  |||||||| ||||| |||||||||| |||| | |||||||||||    
T  38140399 attgaaatatcaaaaagtaacattttctacataaaatttaacaattgtttccttctttgaatctttaactagtgccctaaagacatttgttagcataac 38140301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 4232768 - 4232828
Alignment:
Q  239 tattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattatttt 299  Q
    ||||||||||||||||| || |||||| || ||||| || |||||| || |||||||||||    
T  4232768 tattcaacacattgaaagtttaaaaagtaattttatctatataaaacttgtaaattatttt 4232828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 319
Target Start/End: Complemental strand, 12101430 - 12101378
Alignment:
Q  267 aactttatttacataaaatttataaattattttctcttttgaatccttaacaa 319  Q
    |||||| ||||||||||||||||  | |||||||| |||| ||||||||||||    
T  12101430 aactttttttacataaaatttatccaatattttctttttttaatccttaacaa 12101378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 323
Target Start/End: Original strand, 40199106 - 40199134
Alignment:
Q  295 attttctcttttgaatccttaacaagtgc 323  Q
    |||||||||||||||||||||||||||||    
T  40199106 attttctcttttgaatccttaacaagtgc 40199134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 194 - 344
Target Start/End: Complemental strand, 39575595 - 39575445
Alignment:
Q  194 acttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaat 293  Q
    ||||||||||||||  ||| ||||||||||||||| |||||||| |||| |||||||||||||||||||||| |||||| | ||||||||||||||||||    
T  39575595 acttgtttagaagtccaaataagaaactttttcttggaaattgtgtatttaacacattgaaacttcaaaaagaaactttttatacataaaatttataaat 39575496  T
Q  294 tattttctcttttgaatccttaacaagtgccctaaggacactcgttagcat 344  Q
    ||||| ||||||||||||||||| |||||||||||||  ||| ||||||||    
T  39575495 tatttcctcttttgaatccttaataagtgccctaagggaacttgttagcat 39575445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 194 - 326
Target Start/End: Original strand, 3855940 - 3856072
Alignment:
Q  194 acttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaat 293  Q
    ||||| || |||||| ||| |||||| ||||||||| ||||||| ||||||||||||||||||||||||||   ||||| |||||||||| |||||||||    
T  3855940 acttgatttgaagtttaaagaagaaattttttcttaaaaattgtgtattcaacacattgaaacttcaaaaatatactttttttacataaattttataaat 3856039  T
Q  294 tattttctcttttgaatccttaacaagtgccct 326  Q
    ||||| ||||||| ||| |||||||||||||||    
T  3856040 tatttcctcttttaaatacttaacaagtgccct 3856072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 3773037 - 3773110
Alignment:
Q  239 tattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatcc 312  Q
    ||||| ||| |||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  3773037 tattcgacatattgaaactttaaaaatgaactttatctacataaaatttataaattattttctcttttgaatcc 3773110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 193 - 342
Target Start/End: Original strand, 1852823 - 1852972
Alignment:
Q  193 cacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaa 292  Q
    |||||||| ||||||| |||  ||||||||| |||| |||||| | || |||| | |||||||  |  ||||| || ||| |||| ||||||||||| ||    
T  1852823 cacttgttaagaagttcaaaatagaaactttatcttggaaattatgtaatcaatatattgaaatattgaaaagcaattttttttatataaaatttatcaa 1852922  T
Q  293 ttattttctcttttgaatccttaacaagtgccctaaggacactcgttagc 342  Q
    || |||||| ||||||||||||||||| | | ||||||||||| ||||||    
T  1852923 ttgttttcttttttgaatccttaacaaatacgctaaggacacttgttagc 1852972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 323
Target Start/End: Original strand, 37534415 - 37534545
Alignment:
Q  194 acttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatt-tacataaaatttataaa 292  Q
    ||||||| ||||||  ||| || ||| ||||||||  ||||| | ||||||||| ||| |||||||||||||  | ||| || |||||||| ||||||||    
T  37534415 acttgttcagaagtctaaaaaataaaatttttcttgaaaattttgtattcaacagattaaaacttcaaaaagatatttttttctacataaattttataaa 37534514  T
Q  293 ttattttctcttttgaatccttaacaagtgc 323  Q
    ||||||  ||| |||||||||||||||||||    
T  37534515 ttatttattctcttgaatccttaacaagtgc 37534545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 193 - 322
Target Start/End: Complemental strand, 306279 - 306151
Alignment:
Q  193 cacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaa 292  Q
    |||||||||||||||||||| || |||  |||| ||||||||||| |||| |||| ||||||| || |||| | |  ||| | ||||| |||||||||||    
T  306279 cacttgtttagaagttaaaagaaaaaatattttattagaaattgtgtattgaacatattgaaaatttaaaatgaatttttttctacat-aaatttataaa 306181  T
Q  293 ttattttctcttttgaatccttaacaagtg 322  Q
    | |||| |||||||||||  ||||||||||    
T  306180 tcatttcctcttttgaataattaacaagtg 306151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 298
Target Start/End: Complemental strand, 6913482 - 6913416
Alignment:
Q  231 aaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattt 298  Q
    ||||||| |||||||||||||||||||| | ||| ||||||| | |||||||||||||||||||||||    
T  6913482 aaattgtgtattcaacacattgaaacttaataaaagaacttt-tctacataaaatttataaattattt 6913416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 343
Target Start/End: Original strand, 42878705 - 42878801
Alignment:
Q  245 acacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagca 343  Q
    ||||||||||| ||  |||||  ||||| |||||||||||||| ||||| ||||||  |||||||| ||||||||||| |||||||||||| |||||||    
T  42878705 acacattgaaagtttgaaaagtgacttt-tttacataaaatttgtaaatcattttcatttttgaattcttaacaagtg-cctaaggacactagttagca 42878801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 320
Target Start/End: Original strand, 12880120 - 12880201
Alignment:
Q  239 tattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaag 320  Q
    ||||||||||||||||| || |||||| || ||| | ||||||||| |||| |||||||| |  ||||||||||||||||||    
T  12880120 tattcaacacattgaaattttaaaaagtaattttttctacataaaacttatcaattatttccatttttgaatccttaacaag 12880201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 349
Target Start/End: Complemental strand, 33058859 - 33058771
Alignment:
Q  260 aaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataaccc 349  Q
    |||||| ||||||  |||||||| |||||||||| |||| || |||||||||||||||||||| ||| |||||||| |||| | ||||||    
T  33058859 aaaaagaaacttttattacataagatttataaatcatttccttttttgaatccttaacaagtgtcct-aggacacttgttaccctaaccc 33058771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 333
Target Start/End: Complemental strand, 29735772 - 29735718
Alignment:
Q  279 ataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggaca 333  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||| |||| ||||    
T  29735772 ataaaatttataaattatttcctcttttaaatcattaacaagtgctctaaagaca 29735718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 352
Target Start/End: Complemental strand, 752226 - 752114
Alignment:
Q  240 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctctttt-gaatccttaacaagtgccctaaggacactcgt 338  Q
    ||||||||||||||||||| |||||| || ||| | ||||||||| | |  ||||| ||||| |||| |||| |||||||||||||||||||  ||| ||    
T  752226 attcaacacattgaaacttgaaaaagtaattttttctacataaaactaaccaatta-tttctattttagaattcttaacaagtgccctaagggtacttgt 752128  T
Q  339 tagcataaccctaa 352  Q
    |||||  |||||||    
T  752127 tagcaagaccctaa 752114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 330
Target Start/End: Complemental strand, 40142038 - 40141933
Alignment:
Q  225 tcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgcc 324  Q
    ||||| || |||| |||||||| |||||||||  ||||||| |||||||| ||||| ||| |||||| || |||    ||||  ||||||||||||||||    
T  40142038 tcttaaaatttgtatattcaactcattgaaacaccaaaaagcaactttatctacatgaaagttataatttgtttctatttttttatccttaacaagtgcc 40141939  T
Q  325 ctaagg 330  Q
    ||||||    
T  40141938 ctaagg 40141933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 318
Target Start/End: Original strand, 41311737 - 41311811
Alignment:
Q  244 aacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaaca 318  Q
    |||| ||||||| || |||||| || ||| | |||||||||||||||||| |||| |  ||||||||||||||||    
T  41311737 aacaaattgaaagtttaaaaagtaattttttctacataaaatttataaatcatttacatttttgaatccttaaca 41311811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 322
Target Start/End: Original strand, 40083450 - 40083579
Alignment:
Q  194 acttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatt-tacataaaatttataaa 292  Q
    ||||||||||||||| |||  | ||  ||| ||||||||||||| ||||||| ||||||||||  ||||||| || ||| ||  ||| ||||||||| |     
T  40083450 acttgtttagaagtttaaagtaaaagttttatcttagaaattgtgtattcaatacattgaaacaacaaaaagtaatttttttcaacaaaaaatttatcag 40083549  T
Q  293 ttattttctcttttgaatccttaacaagtg 322  Q
    ||||||    ||||||||| ||||||||||    
T  40083550 ttatttctatttttgaatctttaacaagtg 40083579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 4640222 - 4640298
Alignment:
Q  240 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaa 316  Q
    ||||||||| |||||| || ||||||  ||||| | ||| ||||| |||||||||||||||  |||| |||||||||    
T  4640222 attcaacacgttgaaaatttaaaaagttactttttctacgtaaaacttataaattattttcatttttaaatccttaa 4640298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 350
Target Start/End: Complemental strand, 11091511 - 11091435
Alignment:
Q  274 tttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataaccct 350  Q
    |||||||||||||||| |||||||||   ||| ||||| |||||||||| | ||||| || | |||||||| |||||    
T  11091511 tttacataaaatttattaattatttttattttagaatctttaacaagtgtcttaagggcatttgttagcatcaccct 11091435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 11189224 - 11189188
Alignment:
Q  288 ataaattattttctcttttgaatccttaacaagtgcc 324  Q
    |||||||||||||| |||| |||||||||||||||||    
T  11189224 ataaattattttcttttttaaatccttaacaagtgcc 11189188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 346
Target Start/End: Original strand, 39792061 - 39792133
Alignment:
Q  274 tttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataa 346  Q
    ||||||||||||||   ||||||||  | |||||||| ||||||||||| ||||| |||| | ||||||||||    
T  39792061 tttacataaaattttacaattatttctttttttgaattcttaacaagtgtcctaaagacatttgttagcataa 39792133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 319
Target Start/End: Original strand, 43651470 - 43651558
Alignment:
Q  231 aaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaa 319  Q
    ||||||| ||||||  || |||||| || |||||  || ||| | |||||||||||||  ||||||||||||||||||||  |||||||    
T  43651470 aaattgtgtattcagtacgttgaaattttaaaaaataaatttttatacataaaatttaacaattattttctcttttgaatatttaacaa 43651558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 194 - 325
Target Start/End: Complemental strand, 4197322 - 4197190
Alignment:
Q  194 acttgtttagaagttaaaacaagaaacttttt-cttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaa 292  Q
    ||||||||||||||||||| |||||||||||| ||| |||||||| |||||||||| ||||||||| |||||  |||||| | |||||||||||||||||    
T  4197322 acttgtttagaagttaaaagaagaaacttttttcttggaaattgtgtattcaacaccttgaaacttaaaaaaataactttttctacataaaatttataaa 4197223  T
Q  293 ttattttctcttttgaatccttaacaagtgccc 325  Q
    | |||| ||||||||||||||||||||||||||    
T  4197222 tcatttcctcttttgaatccttaacaagtgccc 4197190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 200 - 335
Target Start/End: Complemental strand, 13414383 - 13414248
Alignment:
Q  200 ttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattatttt 299  Q
    ||||||||  ||| ||||||||||||||| |||||||| |||| |||   |||||||||||||||  |||||| ||||||||||||||||||||||||      
T  13414383 ttagaagtccaaataagaaactttttcttggaaattgtgtatttaacctgttgaaacttcaaaaataaactttttttacataaaatttataaattattcc 13414284  T
Q  300 ctcttttgaatccttaacaagtgccctaaggacact 335  Q
    |||||||||||| |||||||||||||||||| ||||    
T  13414283 ctcttttgaatcattaacaagtgccctaagggcact 13414248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 194 - 313
Target Start/End: Complemental strand, 33873979 - 33873860
Alignment:
Q  194 acttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaat 293  Q
    |||||||||||||| |||| |||||||||||| || |||||||| | || ||| ||||||||||| ||||| ||||| | | ||||||||||||||| ||    
T  33873979 acttgtttagaagtcaaaagaagaaacttttttttggaaattgtgtttttaacgcattgaaacttaaaaaaagaactatttctacataaaatttatagat 33873880  T
Q  294 tattttctcttttgaatcct 313  Q
     |||| ||||||||||||||    
T  33873879 catttcctcttttgaatcct 33873860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 15501413 - 15501517
Alignment:
Q  194 acttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaactt--caaaaaggaactttatttacataaaatttataa 291  Q
    |||||||||||||| |||| || | ||||| ||||| ||||||| |||||| |||||||||||||   |||||  |||||||||||||||||||||||||    
T  15501413 acttgtttagaagtcaaaagaaaatactttatcttataaattgtgtattcatcacattgaaacttaaaaaaaaataactttatttacataaaatttataa 15501512  T
Q  292 attat 296  Q
    |||||    
T  15501513 attat 15501517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 231 - 316
Target Start/End: Complemental strand, 26184692 - 26184607
Alignment:
Q  231 aaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaa 316  Q
    ||||||| |||||||  |||||||||||||||||| |||||| | ||| |||||||||||||| |||| |||||| ||||| ||||    
T  26184692 aaattgtgtattcaaatcattgaaacttcaaaaagaaactttttatacttaaaatttataaataatttcctctttagaatcattaa 26184607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 241 - 334
Target Start/End: Original strand, 39946413 - 39946506
Alignment:
Q  241 ttcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacac 334  Q
    |||| |||||||||| || |||| | ||| || ||||||| ||||| ||||||||||| |||||||| ||||||||||| |||| |||||||||    
T  39946413 ttcaccacattgaaaatttaaaatgaaaccttctttacatgaaattcataaattatttcctcttttgcatccttaacaaatgccttaaggacac 39946506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 36832890 - 36832780
Alignment:
Q  240 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgtt 339  Q
    |||||| |||||||||||| ||||| ||||||| | |||||||||||||||| ||| |||||  ||||| | ||||||  ||||||||||| |||| |||    
T  36832890 attcaatacattgaaactt-aaaaatgaactttttctacataaaatttataattta-tttct-atttgagttcttaacttgtgccctaagggcacttgtt 36832794  T
Q  340 agcataaccctaat 353  Q
    || |||||||||||    
T  36832793 aggataaccctaat 36832780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 329
Target Start/End: Original strand, 43209113 - 43209221
Alignment:
Q  221 tttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttct-cttttgaatccttaacaa 319  Q
    ||||||||| || |||| ||||||  ||||||||||||||||||| |||||| | || | ||||| | ||||||||||| | ||||| ||| ||||||||    
T  43209113 tttttcttaaaagttgtgtattcagtacattgaaacttcaaaaagaaactttttctataaaaaatct-taaattattttttacttttaaattcttaacaa 43209211  T
Q  320 gtgccctaag 329  Q
    ||||||||||    
T  43209212 gtgccctaag 43209221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 199 - 343
Target Start/End: Original strand, 22677507 - 22677651
Alignment:
Q  199 tttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattt 298  Q
    |||||||||  ||| |||||||||||| || ||| |||| | ||||  ||||||||| || |||| | |||  | ||||||| |||||  ||||||||||    
T  22677507 tttagaagtctaaagaagaaactttttattggaacttgtgttttcactacattgaaaattaaaaatgaaaccctttttacattaaattcgtaaattattt 22677606  T
Q  299 tctcttttgaatccttaacaagtgccctaaggacactcgttagca 343  Q
     |||||||||||| ||||  | |||||| ||| ||||||||||||    
T  22677607 cctcttttgaatcattaatcattgcccttagggcactcgttagca 22677651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 311
Target Start/End: Complemental strand, 32931585 - 32931505
Alignment:
Q  231 aaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatc 311  Q
    ||||||| |||||||| |||||||  || |||||| ||| || |||| ||||||||||||||| | |||||||||||||||    
T  32931585 aaattgtgtattcaacccattgaagttttaaaaagaaacattttttatataaaatttataaataactttctcttttgaatc 32931505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 338
Target Start/End: Original strand, 6317014 - 6317112
Alignment:
Q  239 tattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgt 338  Q
    ||||||||| |||||||| | |||||  |||||| |  | ||||||||||| |||||||| || ||||||||| ||||| ||||||||||||| ||||||    
T  6317014 tattcaacatattgaaacattaaaaaataactttttcaatataaaatttatcaattatttcct-ttttgaatctttaactagtgccctaaggatactcgt 6317112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 299
Target Start/End: Original strand, 38868878 - 38868937
Alignment:
Q  240 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattatttt 299  Q
    |||||||||||||||| || |||||| |||||| | ||||||||| ||||||||||||||    
T  38868878 attcaacacattgaaagtttaaaaagtaactttttctacataaaacttataaattatttt 38868937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 349
Target Start/End: Original strand, 4068359 - 4068449
Alignment:
Q  259 caaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataaccc 349  Q
    ||||||| |||||| | |||||| ||||||  |||| |||  | ||||||||||||||| |||||||||||| |||| ||||||| |||||    
T  4068359 caaaaagtaactttttctacatagaatttaacaattgtttctttttttgaatccttaactagtgccctaagggcacttgttagcaaaaccc 4068449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 340
Target Start/End: Original strand, 44369076 - 44369142
Alignment:
Q  274 tttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgtta 340  Q
    |||| ||||||||||  ||||||||||| |||| ||||||||||||||||| |||| ||||| ||||    
T  44369076 tttatataaaatttaacaattattttctttttttaatccttaacaagtgccttaagaacacttgtta 44369142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 321
Target Start/End: Original strand, 48051717 - 48051791
Alignment:
Q  247 acattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagt 321  Q
    ||||||||||  ||||||| |||||| | |||||||||||||| ||||||||    |||||||||||||||||||    
T  48051717 acattgaaacaacaaaaagtaactttttctacataaaatttatcaattatttctatttttgaatccttaacaagt 48051791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 316
Target Start/End: Original strand, 36185562 - 36185663
Alignment:
Q  215 agaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatcctt 314  Q
    ||||||||||| | || |||||| |||| || || |||||||||||||| | || ||| | |||||||| ||| |||||  ||||||||||| |||||||    
T  36185562 agaaactttttatgaggaattgtatattaaatacgttgaaacttcaaaacgaaattttttctacataaattttttaaatccttttctcttttaaatcctt 36185661  T
Q  315 aa 316  Q
    ||    
T  36185662 aa 36185663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 352
Target Start/End: Complemental strand, 3167196 - 3167124
Alignment:
Q  280 taaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataaccctaa 352  Q
    |||||||||  ||||||||||  ||||| |||||||||||||| ||||| |||||| |||| || ||||||||    
T  3167196 taaaatttaccaattattttcatttttgtatccttaacaagtgtcctaaagacacttgttaacaaaaccctaa 3167124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 332
Target Start/End: Complemental strand, 25234599 - 25234515
Alignment:
Q  249 attgaaacttcaaaaaggaactttatt-tacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggac 332  Q
    ||||||| |||||||||||||||| || ||||||||||||||||||   ||  |||||| |||||||||||| || | |||||||    
T  25234599 attgaaatttcaaaaaggaacttttttctacataaaatttataaatcggttattcttttaaatccttaacaaatgtcataaggac 25234515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 14193922 - 14193863
Alignment:
Q  240 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattatttt 299  Q
    |||||| ||||||||| || |||||| ||| || | ||||||||||||||||||||||||    
T  14193922 attcaagacattgaaagtttaaaaagtaacattttctacataaaatttataaattatttt 14193863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 319
Target Start/End: Original strand, 27915240 - 27915334
Alignment:
Q  225 tcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattt-tctcttttgaatccttaacaa 319  Q
    ||||| || |||| ||||||||||||| |||  | |||||  |||||| || ||||||||||||| |||||||| ||| |||||||||||||||||    
T  27915240 tcttaaaagttgtgtattcaacacattcaaatattaaaaactaacttttttaacataaaatttatcaattatttctct-ttttgaatccttaacaa 27915334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 322
Target Start/End: Original strand, 31917681 - 31917727
Alignment:
Q  276 tacataaaatttataaattattttctcttttgaatccttaacaagtg 322  Q
    ||||||||||||||||||||| ||   ||||||||||||||||||||    
T  31917681 tacataaaatttataaattatatttatttttgaatccttaacaagtg 31917727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 319
Target Start/End: Complemental strand, 32536954 - 32536869
Alignment:
Q  234 ttgtctattcaacacattgaaacttcaaaaaggaactttatttacataaa-atttataaattattttctcttttgaatccttaacaa 319  Q
    |||| ||||||||| ||||||| ||  ||||  |||||| | |||||||| |||||||||| ||| |||||||||||||||||||||    
T  32536954 ttgtatattcaacaaattgaaatttttaaaaa-aactttttctacataaagatttataaatcattctctcttttgaatccttaacaa 32536869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 333
Target Start/End: Original strand, 51277994 - 51278083
Alignment:
Q  244 aacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctct-tttgaatccttaacaagtgccctaaggaca 333  Q
    |||||||||||| || |||||  || ||||| ||||||||| || ||||||| ||||| | |||||||| ||||| |||||||||||||||    
T  51277994 aacacattgaaagtttaaaaattaaatttatctacataaaacttgtaaatta-tttctatatttgaatctttaactagtgccctaaggaca 51278083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 319
Target Start/End: Original strand, 3775370 - 3775455
Alignment:
Q  234 ttgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaa 319  Q
    |||| |||| ||||||||||||| |||||||  ||| || | |||||||||  ||| |||| |||||| |||| ||||||||||||    
T  3775370 ttgtatattaaacacattgaaacatcaaaaaacaacattttctacataaaaactatcaattgttttcttttttaaatccttaacaa 3775455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 26660678 - 26660637
Alignment:
Q  217 aaactttttcttagaaattgtctattcaacacattgaaactt 258  Q
    |||||||||||| |||||||| ||||||||||||| ||||||    
T  26660678 aaactttttcttggaaattgtgtattcaacacattcaaactt 26660637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 317
Target Start/End: Complemental strand, 26683712 - 26683635
Alignment:
Q  240 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaac 317  Q
    |||||| ||||||||| || |||||| ||  || | ||||||||||||||||||||||| |  |||| ||||||||||    
T  26683712 attcaagacattgaaaatttaaaaagtaatattttctacataaaatttataaattatttccatttttaaatccttaac 26683635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 335
Target Start/End: Original strand, 6167838 - 6167942
Alignment:
Q  231 aaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaagg 330  Q
    |||||||  ||||||  ||||||||||| |||| | |||||| ||||| ||||||| || |||||||||   || || || |||||||||||| || |||    
T  6167838 aaattgtgcattcaatgcattgaaactttaaaatgtaactttttttacttaaaattcatcaattatttttatttgtgtattcttaacaagtgctctgagg 6167937  T
Q  331 acact 335  Q
    |||||    
T  6167938 acact 6167942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 335
Target Start/End: Complemental strand, 38547540 - 38547444
Alignment:
Q  239 tattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacact 335  Q
    |||||||||||||||||  | |||||| |  ||| || ||||||||||||| ||||||||  | |||| |||| ||||| ||||||| |||| ||||    
T  38547540 tattcaacacattgaaatattaaaaagtagtttttttaacataaaatttatcaattatttctttttttaaatctttaactagtgcccgaagggcact 38547444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 327
Target Start/End: Complemental strand, 39144309 - 39144230
Alignment:
Q  248 cattgaaacttcaaaaag-gaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgcccta 327  Q
    ||||||||||| |||||| ||  ||||||| |||||||||||| |||||||||   ||||||||| |||| ||||||||||    
T  39144309 cattgaaactttaaaaagtgatttttattt-cataaaatttatcaattatttttatttttgaatctttaataagtgcccta 39144230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 193 - 350
Target Start/End: Original strand, 17630247 - 17630402
Alignment:
Q  193 cacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaa-ctttatttacataaaatttataa 291  Q
    |||||||||||||||| ||| ||||||||||||||| | |||||| ||||||| |||||||||||| |||||  || |||| | ||||||||||||||||    
T  17630247 cacttgtttagaagttcaaagaagaaactttttcttgggaattgtatattcaagacattgaaacttaaaaaaaaaaactttttctacataaaatttataa 17630346  T
Q  292 attattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataaccct 350  Q
    ||||||| ||||||| ||||||||||||||||||| ||| |||   |||||||||||||    
T  17630347 attatttcctcttttaaatccttaacaagtgcccttagggcac---ttagcataaccct 17630402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 220 - 326
Target Start/End: Original strand, 39527013 - 39527119
Alignment:
Q  220 ctttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaa 319  Q
    |||| |||| ||||||||  ||||||| |||||||||  |||||||||||||| | ||||||||||||||  ||||||| |  |||||||||||||||||    
T  39527013 ctttatcttggaaattgtgcattcaacccattgaaacaacaaaaaggaactttttctacataaaatttatcgattatttccaattttgaatccttaacaa 39527112  T
Q  320 gtgccct 326  Q
    |||||||    
T  39527113 gtgccct 39527119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 319
Target Start/End: Original strand, 15826215 - 15826340
Alignment:
Q  193 cacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaa 292  Q
    ||||||||||||||| |||| |||||  ||||||||||||||||| ||||||||  ||||||||||  ||||| || ||| | |||||||||  | ||||    
T  15826215 cacttgtttagaagtcaaaataagaatttttttcttagaaattgtgtattcaacctattgaaactttgaaaagcaa-tttttctacataaaacatgtaaa 15826313  T
Q  293 ttattttctcttttgaatccttaacaa 319  Q
    | |||| |||||||||||  |||||||    
T  15826314 tcatttactcttttgaatgtttaacaa 15826340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 190 - 330
Target Start/End: Complemental strand, 2571114 - 2570975
Alignment:
Q  190 ggacacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttat 289  Q
    ||||||||||| ||||||| ||| | |||| ||| |||| | |||  | |||||||||||||||||||| |||||  |||| ||| ||||||||| || |    
T  2571114 ggacacttgttaagaagtttaaaaaggaaattttatcttgggaatgatgtattcaacacattgaaactttaaaaa-taactatatctacataaaacttgt 2571016  T
Q  290 aaattattttctct-tttgaatccttaacaagtgccctaagg 330  Q
    |||||| ||||| | |||||||||||||| ||||||||||||    
T  2571015 aaatta-tttctatatttgaatccttaactagtgccctaagg 2570975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 187 - 331
Target Start/End: Original strand, 7444898 - 7445042
Alignment:
Q  187 ttaggacacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatt 286  Q
    ||||| |||||| | |||| || ||| |||||||||| ||||   | |||| |||||||||||||||||  |||||||| |||||| | ||||| ||| |    
T  7444898 ttagggcacttgataagaaattcaaagaagaaactttatcttgagatttgtgtattcaacacattgaaatatcaaaaagcaactttttatacatgaaagt 7444997  T
Q  287 tataaattattttctctttt-gaatccttaacaagtgccctaagga 331  Q
    ||| ||||| ||||| |||| ||||| |||||||||||||||||||    
T  7444998 tatcaatta-tttctattttagaatctttaacaagtgccctaagga 7445042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 340
Target Start/End: Complemental strand, 50015654 - 50015530
Alignment:
Q  217 aaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattt-tctcttttgaatcctta 315  Q
    ||||||| |||| ||| |||| ||||||||||||| |||  |||||||| |||||| | |||| ||||||||| |||| ||| | | |||||||| ||||    
T  50015654 aaactttgtcttggaatttgtatattcaacacattcaaaaatcaaaaagtaactttttatacaaaaaatttatcaattgtttctattttttgaattctta 50015555  T
Q  316 acaagtgccctaaggacactcgtta 340  Q
    ||||||  | |||||||||||||||    
T  50015554 acaagtatcataaggacactcgtta 50015530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 330
Target Start/End: Complemental strand, 27262842 - 27262727
Alignment:
Q  216 gaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattt-tctcttttgaatcctt 314  Q
    |||| ||| |||||||| |||| ||||||||||||| |||| | |||||| || ||| | ||||||||| |||| |||| ||| | | ||||||||||||    
T  27262842 gaaattttgtcttagaatttgtgtattcaacacattaaaacattaaaaagtaattttttctacataaaagttatcaattgtttctattttttgaatcctt 27262743  T
Q  315 aacaagtgccctaagg 330  Q
    |||||||| |||||||    
T  27262742 aacaagtgtcctaagg 27262727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 322
Target Start/End: Original strand, 30984481 - 30984611
Alignment:
Q  193 cacttgtttagaagttaaaacaagaaactttttcttagaaa-ttgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataa 291  Q
    ||||||||||||||| |||| |||||   |||| || |||| |||| |||| |||| ||| ||||||||||||  |||||| | ||||||||| ||||||    
T  30984481 cacttgtttagaagtcaaaagaagaattattttttttgaaaattgtgtatttaacaaattaaaacttcaaaaataaactttttctacataaaacttataa 30984580  T
Q  292 attattttctcttttgaatccttaacaagtg 322  Q
    || ||||  ||||||||| | ||||||||||    
T  30984581 atcatttcatcttttgaaactttaacaagtg 30984611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 329
Target Start/End: Complemental strand, 34620694 - 34620605
Alignment:
Q  240 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctctttt-gaatccttaacaagtgccctaag 329  Q
    ||||||||||||||||||| |||||| || ||| | ||||||||| |||  ||||| ||||| |||| |||||||||||||||||||||||    
T  34620694 attcaacacattgaaacttgaaaaagtaattttttctacataaaacttaccaatta-tttctattttagaatccttaacaagtgccctaag 34620605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 305 - 347
Target Start/End: Original strand, 41885572 - 41885614
Alignment:
Q  305 ttgaatccttaacaagtgccctaaggacactcgttagcataac 347  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  41885572 ttgaatccttaacaagtgccctaaggacactcgttaacataac 41885614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 16966616 - 16966544
Alignment:
Q  221 tttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaat 293  Q
    ||||| || |||||||| || ||| ||||||||||||||||||| ||||||| | ||||||||||||| ||||    
T  16966616 ttttttttggaaattgtgtactcaccacattgaaacttcaaaaatgaactttttctacataaaatttacaaat 16966544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 343
Target Start/End: Complemental strand, 1905779 - 1905712
Alignment:
Q  276 tacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagca 343  Q
    ||||| ||||| ||||||||||| |||||||||||||||||| | |||||| ||| |||| |||||||    
T  1905779 tacatgaaattcataaattatttcctcttttgaatccttaaccattgcccttagggcactggttagca 1905712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 288
Target Start/End: Complemental strand, 4488857 - 4488769
Alignment:
Q  196 ttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaattta 288  Q
    ||||||| |||| |||| |||||||||||||||  ||||||| ||||||||||    |||||| ||||| ||||||| | |||||||||||||    
T  4488857 ttgtttaaaagtcaaaagaagaaactttttcttgaaaattgtatattcaacac----aaacttaaaaaaagaactttttctacataaaattta 4488769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 320
Target Start/End: Complemental strand, 24980911 - 24980816
Alignment:
Q  225 tcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaag 320  Q
    |||||||| |||| ||||||||||||||||||  ||||||| ||||| || ||||||||| |||| |||| |||    ||||| ||||||||||||    
T  24980911 tcttagaatttgtgtattcaacacattgaaacaacaaaaagcaacttaatctacataaaaattatcaattgtttatatttttggatccttaacaag 24980816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 320
Target Start/End: Complemental strand, 24989669 - 24989574
Alignment:
Q  225 tcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaag 320  Q
    |||||||| |||| ||||||||||||||||||  ||||||| ||||| || ||||||||| |||| |||| |||    ||||| ||||||||||||    
T  24989669 tcttagaatttgtgtattcaacacattgaaacaacaaaaagcaacttaatctacataaaaattatcaattgtttatatttttggatccttaacaag 24989574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 325
Target Start/End: Original strand, 52698444 - 52698554
Alignment:
Q  215 agaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatcctt 314  Q
    ||||| |||||||| | |||||| |||||||||||||||||   ||||||  |||||| | | ||||||| |||| |||| ||| |  |||| |||||||    
T  52698444 agaaattttttcttgggaattgtgtattcaacacattgaaataacaaaaaacaactttttctccataaaagttatcaattgtttccattttttaatcctt 52698543  T
Q  315 aacaagtgccc 325  Q
    |||||||||||    
T  52698544 aacaagtgccc 52698554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 355
Target Start/End: Original strand, 34040745 - 34040869
Alignment:
Q  230 gaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaag 329  Q
    |||||||| |||||||||||| ||||| | |||||  ||| || | ||||||||||||| |||| |||| ||||||| |||| |||||||||| | | |     
T  34040745 gaaattgtgtattcaacacatagaaacattaaaaaa-aacattttctacataaaatttacaaataatttcctcttttaaatctttaacaagtgtcattaa 34040843  T
Q  330 gacactcgttagcataaccctaattt 355  Q
     |||||  ||||||||||||| ||||    
T  34040844 tacacttattagcataacccttattt 34040869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 333
Target Start/End: Original strand, 1411671 - 1411809
Alignment:
Q  194 acttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaat 293  Q
    ||||||| ||||||| ||| | |||| ||| |||||| |||  | ||||||||||||||||| || |||||| || ||||| ||||||||| || |||||    
T  1411671 acttgttaagaagtttaaaaaggaaattttatcttaggaatgatgtattcaacacattgaaagtttaaaaagtaa-tttatctacataaaacttgtaaat 1411769  T
Q  294 tattttctct-tttgaatccttaacaagtgccctaaggaca 333  Q
    ||  |||| | |||||||| ||||| |||||| ||||||||    
T  1411770 ta-cttctatatttgaatctttaactagtgccttaaggaca 1411809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 322
Target Start/End: Complemental strand, 26923221 - 26923177
Alignment:
Q  278 cataaaatttataaattattttctcttttgaatccttaacaagtg 322  Q
    ||||||| ||||||||||||| |||||||||||| ||||||||||    
T  26923221 cataaaacttataaattatttcctcttttgaatcattaacaagtg 26923177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 322
Target Start/End: Original strand, 47235508 - 47235596
Alignment:
Q  234 ttgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtg 322  Q
    |||| ||||||||| |||||||| | |||||| |||||||||||||| ||| |||| |||| |||    |||||||| |||||||||||    
T  47235508 ttgtgtattcaacaaattgaaacattaaaaagcaactttatttacatgaaagttatcaattgtttctatttttgaattcttaacaagtg 47235596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 343
Target Start/End: Complemental strand, 36995355 - 36995204
Alignment:
Q  193 cacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaa-tttataa 291  Q
    |||||||| ||||||  ||| |||||| ||| | || ||||| ||  ||||||  |||||||| || | |||| |||||| | ||| ||||| ||||  |    
T  36995355 cacttgttaagaagtccaaagaagaaattttgttttggaaatggtgcattcaatgcattgaaattttataaagtaactttttctacttaaaaatttacca 36995256  T
Q  292 attattttctcttttgaatccttaacaagtgccctaaggacactcgttagca 343  Q
    ||||||| |  ||||| |||||||||||||||||||||| |||| |||||||    
T  36995255 attatttccatttttgtatccttaacaagtgccctaagggcacttgttagca 36995204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 326
Target Start/End: Complemental strand, 51972147 - 51972064
Alignment:
Q  243 caacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccct 326  Q
    |||||||||||||||| |||||  |||||| |  ||||||||||||  |||||||||   ||| ||||||||||| ||||||||    
T  51972147 caacacattgaaacttgaaaaattaactttttcaacataaaatttaccaattatttttaatttagaatccttaactagtgccct 51972064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 322
Target Start/End: Original strand, 51139291 - 51139337
Alignment:
Q  276 tacataaaatttataaattattttctcttttgaatccttaacaagtg 322  Q
    |||||||||||| ||||| |||||||||||||| | |||||||||||    
T  51139291 tacataaaatttctaaatcattttctcttttgagttcttaacaagtg 51139337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 316
Target Start/End: Complemental strand, 6948285 - 6948197
Alignment:
Q  227 ttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaa 316  Q
    ||||||||||| ||||||| ||||||||| || ||||| | | ||| ||||  ||||||||||||||||| |  |||||| |||||||||    
T  6948285 ttagaaattgtgtattcaagacattgaaattttaaaaatg-attttttttatgtaaaatttataaattatatcttcttttaaatccttaa 6948197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 319
Target Start/End: Original strand, 38332974 - 38333019
Alignment:
Q  274 tttacataaaatttataaattattttctcttttgaatccttaacaa 319  Q
    |||||||||||||| ||||| ||||  |||||||||||||||||||    
T  38332974 tttacataaaatttttaaatcatttattcttttgaatccttaacaa 38333019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 348
Target Start/End: Complemental strand, 41048121 - 41048012
Alignment:
Q  239 tattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgt 338  Q
    |||||||||| |||||| || |||||  |||||| | ||  | |||||||||| |||||||   |||||| | |||||| |||||| |||||| ||| ||    
T  41048121 tattcaacaccttgaaattttaaaaataaactttttctatttcaaatttataatttatttttatttttgagttcttaactagtgccttaaggatacttgt 41048022  T
Q  339 tagcataacc 348  Q
    ||||||||||    
T  41048021 tagcataacc 41048012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 343
Target Start/End: Original strand, 15647259 - 15647335
Alignment:
Q  267 aactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagca 343  Q
    |||||| | ||| ||||||||||||||||||| |  ||||| |||| |||| | || |||||||||||| |||||||    
T  15647259 aactttttctacttaaaatttataaattatttccatttttgcatccctaactaatgtcctaaggacacttgttagca 15647335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 193 - 326
Target Start/End: Original strand, 31375490 - 31375623
Alignment:
Q  193 cacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaa 292  Q
    |||||||||||||||  ||| |||||| |||||||| |||||||| |||||||||||||||||||| |||||||||| || | ||||||| ||||| |||    
T  31375490 cacttgtttagaagtctaaataagaaattttttcttggaaattgtgtattcaacacattgaaactttaaaaaggaacattttctacataagatttacaaa 31375589  T
Q  293 ttattttctcttttgaatccttaacaagtgccct 326  Q
    | |||| ||||| |||||||||||||||||||||    
T  31375590 taatttcctcttctgaatccttaacaagtgccct 31375623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 193 - 305
Target Start/End: Original strand, 48600599 - 48600709
Alignment:
Q  193 cacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaa 292  Q
    |||||||||||||||  ||| |||||||||||||||  ||||| | |  |||| |||||||||||| |||||| || ||| | ||| |||||||||||||    
T  48600599 cacttgtttagaagtccaaaaaagaaactttttcttgaaaattatgt--tcaatacattgaaactttaaaaagtaattttttctacgtaaaatttataaa 48600696  T
Q  293 ttattttctcttt 305  Q
    |||||| ||||||    
T  48600697 ttatttcctcttt 48600709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 343
Target Start/End: Original strand, 15985279 - 15985382
Alignment:
Q  240 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgtt 339  Q
    ||||||||||||||||  | |||||| || ||| || ||||||||||||| |||||||| || ||||||||| ||||| |||| ||| ||| |||| |||    
T  15985279 attcaacacattgaaatattaaaaagtaatttttttaacataaaatttatcaattatttccttttttgaatctttaaccagtgtccttagggcacttgtt 15985378  T
Q  340 agca 343  Q
    ||||    
T  15985379 agca 15985382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 191 - 355
Target Start/End: Complemental strand, 29577395 - 29577231
Alignment:
Q  191 gacacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttata 290  Q
    |||||| ||| |||| ||||||  ||||||||| ||||  ||||||| ||||  ||   ||||||  |||||||| || ||| | |||||||||||||      
T  29577395 gacactagttaagaaattaaaagtagaaactttatcttgaaaattgtgtatttgacttcttgaaatatcaaaaagtaattttttctacataaaatttagc 29577296  T
Q  291 aattattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataaccctaattt 355  Q
    |||| ||| || |||| |||||||||| | |||||||||| |||  |||||||||||||| ||||    
T  29577295 aattgtttccttttttaaatccttaactaatgccctaagggcacctgttagcataacccttattt 29577231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 239 - 330
Target Start/End: Complemental strand, 31830265 - 31830174
Alignment:
Q  239 tattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctct-tttgaatccttaacaagtgccctaagg 330  Q
    ||||||||||||||||| || |||||| |||||| | ||||||||| || ||||||| ||||| | |||||||||||||| || |||||||||    
T  31830265 tattcaacacattgaaagtttaaaaagtaactttgtctacataaaacttgtaaatta-tttctatatttgaatccttaactagagccctaagg 31830174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 277 - 349
Target Start/End: Original strand, 50173432 - 50173504
Alignment:
Q  277 acataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataaccc 349  Q
    ||||||||||||  |||| ||| || ||||||||||||||| |||| ||||||| |||| |||||||||||||    
T  50173432 acataaaatttagcaattgtttccttttttgaatccttaactagtgtcctaagggcacttgttagcataaccc 50173504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 324
Target Start/End: Complemental strand, 31732155 - 31732064
Alignment:
Q  234 ttgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttc-tcttttgaatccttaacaagtgcc 324  Q
    |||| ||||||||| |||||||| |||||||| |||||| |  |||| ||| |||| |||||||| | | ||||||||||||||||||||||    
T  31732155 ttgtgtattcaacatattgaaacatcaaaaagcaactttttcaacatgaaagttatgaattatttccattttttgaatccttaacaagtgcc 31732064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 343
Target Start/End: Original strand, 42983913 - 42984012
Alignment:
Q  244 aacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagca 343  Q
    |||||||||||| || |||||| ||||||   |||||||||||||||||| |||| |  ||||||||| ||||||||||  || ||| |||| |||||||    
T  42983913 aacacattgaaaatttaaaaagtaactttgactacataaaatttataaatcatttccatttttgaatcattaacaagtgttcttagggcacttgttagca 42984012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 343
Target Start/End: Original strand, 45153551 - 45153645
Alignment:
Q  248 cattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagca 343  Q
    ||||||||||| | |||| |||||| | ||| |||||||||| |||||||| | |||||| |||||||| ||||| ||||||| |||| |||||||    
T  45153551 cattgaaactttataaagtaactttttctacttaaaatttatcaattatttccacttttgtatccttaaaaagtg-cctaagggcacttgttagca 45153645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 289
Target Start/End: Original strand, 32978065 - 32978155
Alignment:
Q  199 tttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttat 289  Q
    |||| |||| |||| |||||| ||||||||| | |||||  |||||||| ||| |||||||||||| ||| ||| | ||||||||||||||    
T  32978065 tttaaaagtcaaaagaagaaattttttcttaaagattgtgcattcaacatattaaaacttcaaaaaagaattttttctacataaaatttat 32978155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 349
Target Start/End: Complemental strand, 54413724 - 54413640
Alignment:
Q  267 aactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaag--gacactcgttagcataaccc 349  Q
    |||||| |||||||||||||| ||||||| || ||||||| || |||| |||| |||||||||   ||||| |||||||||||||    
T  54413724 aactttttttacataaaatttgtaaattaattcctcttttaaaaccttgacaaatgccctaagaacacacttgttagcataaccc 54413640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 348
Target Start/End: Complemental strand, 11434876 - 11434804
Alignment:
Q  276 tacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataacc 348  Q
    ||||||| ||||| |||| |||| ||||||||||| |||||||||| ||||||   |||| ||||||||||||    
T  11434876 tacataagatttacaaataatttcctcttttgaattcttaacaagttccctaaaatcacttgttagcataacc 11434804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 340
Target Start/End: Original strand, 24487773 - 24487872
Alignment:
Q  242 tcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattt-tctcttttgaatccttaacaagtgccctaaggacactcgtta 340  Q
    |||||| ||| |||| |||||||  |||||| | ||||||||| |||| |||| ||| | | ||||||||| |||||||||||||||||| |||| ||||    
T  24487773 tcaacatattaaaacatcaaaaattaactttttctacataaaagttatcaattgtttctattttttgaatcattaacaagtgccctaagggcacttgtta 24487872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 317
Target Start/End: Original strand, 31844964 - 31845047
Alignment:
Q  234 ttgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaac 317  Q
    |||| ||||||||| |||| ||||| |||||| || |||   ||||| |||||| |||||||||| || |||||||||||||||    
T  31844964 ttgtgtattcaacatattggaactttaaaaagtaatttttcatacattaaatttgtaaattatttccttttttgaatccttaac 31845047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 317
Target Start/End: Complemental strand, 50037287 - 50037194
Alignment:
Q  225 tcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttattta-cataaaatttataaattattttctcttttgaatccttaac 317  Q
    ||||| || |||| ||||||||||||| |||| | |||||  || ||| |||| |||||||||||| |||||||| || ||||||||| |||||    
T  50037287 tcttaaaagttgtgtattcaacacattaaaacattaaaaaataattttttttaacataaaatttatcaattatttccttttttgaatctttaac 50037194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 36924600 - 36924647
Alignment:
Q  274 tttacataaaatttataaattattttctcttttgaatccttaacaagtg 322  Q
    |||||||||||||||  |||||||| || ||||||||||||||||||||    
T  36924600 tttacataaaatttaacaattattt-cttttttgaatccttaacaagtg 36924647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 340
Target Start/End: Original strand, 54404311 - 54404371
Alignment:
Q  280 taaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgtta 340  Q
    |||||||||  |||| ||| || ||||||||||||||| |||| |||||||||||| ||||    
T  54404311 taaaatttaacaattgtttacttttttgaatccttaactagtgtcctaaggacacttgtta 54404371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 193 - 326
Target Start/End: Original strand, 7176484 - 7176617
Alignment:
Q  193 cacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaa 292  Q
    ||||||||||||||| |||| |||||  ||||| | | ||||||| |||||||||| ||||||||||||||| ||||||||||| | |||||||||||||    
T  7176484 cacttgtttagaagtcaaaagaagaatttttttttga-aaattgtgtattcaacacgttgaaacttcaaaaaagaactttatttgcctaaaatttataaa 7176582  T
Q  293 ttattttctc-ttttgaatccttaacaagtgccct 326  Q
    |||||| ||| ||||||||||||||||||||||||    
T  7176583 ttatttcctctttttgaatccttaacaagtgccct 7176617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 191 - 346
Target Start/End: Original strand, 45185423 - 45185577
Alignment:
Q  191 gacacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttata 290  Q
    ||||||||||||||||||| || |||||||||||| || |||||||| ||||||||| ||| |||||| ||||| |||  ||||||||||||||||||||    
T  45185423 gacacttgtttagaagttacaaaaagaaactttttattggaaattgtatattcaacatattaaaactttaaaaa-gaaaattatttacataaaatttata 45185521  T
Q  291 aattattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataa 346  Q
    ||| ||||| |||||||||| |||| | |||  | ||| |||||| ||||||||||    
T  45185522 aataattttatcttttgaattcttatctagtatcttaaagacacttgttagcataa 45185577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 216 - 330
Target Start/End: Complemental strand, 6939083 - 6938969
Alignment:
Q  216 gaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatcctta 315  Q
    |||||||||| || | |||||| |||||||  |||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||| || |||||    
T  6939083 gaaacttttttttgggaattgtgtattcaaagcattgaaacttcaaaaagaaactttatatacataaaatttataaattatttcctattttaaaacctta 6938984  T
Q  316 acaagtgccctaagg 330  Q
    || | |||| |||||    
T  6938983 accaatgccttaagg 6938969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 221 - 316
Target Start/End: Complemental strand, 38842986 - 38842891
Alignment:
Q  221 tttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaa 316  Q
    ||||| ||||||||| | ||||||| ||||||||| |||||||| ||| ||| | |||||||||||  ||||||||||||||||||||||||||||    
T  38842986 ttttttttagaaattatgtattcaatacattgaaatttcaaaaaagaattttttatacataaaattcttaaattattttctcttttgaatccttaa 38842891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 333
Target Start/End: Complemental strand, 29602123 - 29602039
Alignment:
Q  249 attgaaacttcaaaaaggaactttatttacataaaatttataaattattttctct-tttgaatccttaacaagtgccctaaggaca 333  Q
    ||||||| || |||||| || ||||||||||||||| |||||||||| ||||| | |||||||||||||| ||| |||||||||||    
T  29602123 attgaaagtttaaaaagtaaatttatttacataaaacttataaatta-tttctatatttgaatccttaactagtaccctaaggaca 29602039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 340
Target Start/End: Original strand, 32615819 - 32615972
Alignment:
Q  187 ttaggacacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatt 286  Q
    ||||| |||||| | ||||||| |||  ||||| ||| |||| ||| | || |||||||||||||||||| | |||||  |||||||||||||| ||| |    
T  32615819 ttagggcacttgataagaagtttaaagtagaaattttatcttggaattcgtgtattcaacacattgaaacattaaaaaacaactttatttacatgaaagt 32615918  T
Q  287 tataaattattttctcttttgaatccttaacaagtgccctaaggacactcgtta 340  Q
    ||| |||| |||    ||||| ||| ||||||||| |||||||| |||| ||||    
T  32615919 tatcaattgtttctatttttggatctttaacaagtaccctaagggcacttgtta 32615972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 298
Target Start/End: Complemental strand, 472077 - 472018
Alignment:
Q  239 tattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattt 298  Q
    ||||||||||||||||| || |||||| |||||||| ||||||||| || ||||||||||    
T  472077 tattcaacacattgaaagtttaaaaagtaactttatctacataaaacttgtaaattattt 472018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 347
Target Start/End: Complemental strand, 11766607 - 11766452
Alignment:
Q  193 cacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatt-tacataaaatttataa 291  Q
    |||||||||||||||| |||   |||| |||  |||  |||||||  |||||| ||||||||||  ||||||| || ||| || |||||||||||||  |    
T  11766607 cacttgtttagaagtttaaagtggaaattttaccttgaaaattgtgcattcaagacattgaaacaacaaaaagtaatttttttctacataaaatttaaca 11766508  T
Q  292 attattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataac 347  Q
    | ||| |    ||||||||| ||||||||||||||||| |||||||||||| ||||    
T  11766507 aatatctctatttttgaatctttaacaagtgccctaagaacactcgttagcctaac 11766452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 352
Target Start/End: Original strand, 22575804 - 22575846
Alignment:
Q  310 tccttaacaagtgccctaaggacactcgttagcataaccctaa 352  Q
    ||||||||||||||||||||| |||| ||||||||||||||||    
T  22575804 tccttaacaagtgccctaagggcactggttagcataaccctaa 22575846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 328
Target Start/End: Original strand, 39082528 - 39082577
Alignment:
Q  279 ataaaatttataaattattttctcttttgaatccttaacaagtgccctaa 328  Q
    ||||||||||| ||||||||||  ||||||||| ||||||||||||||||    
T  39082528 ataaaatttatcaattattttcctttttgaatctttaacaagtgccctaa 39082577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 317
Target Start/End: Original strand, 42350422 - 42350499
Alignment:
Q  240 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaac 317  Q
    |||||| ||||||||| || |||||| || ||| | ||||||||||||||||||||||| |  |||| ||||||||||    
T  42350422 attcaagacattgaaaatttaaaaagtaaatttttctacataaaatttataaattatttccatttttaaatccttaac 42350499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 325
Target Start/End: Original strand, 17106201 - 17106287
Alignment:
Q  239 tattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctct-tttgaatccttaacaagtgccc 325  Q
    ||||||||||||||||| || ||||||  ||||||| ||||||||| || |||||||  |||| | |||||||||||||| |||||||    
T  17106201 tattcaacacattgaaagtttaaaaagttactttatctacataaaacttgtaaatta-cttctatatttgaatccttaactagtgccc 17106287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 355
Target Start/End: Complemental strand, 42447475 - 42447420
Alignment:
Q  300 ctcttttgaatccttaacaagtgccctaaggacactcgttagcataaccctaattt 355  Q
    ||||||||||| |||| |||||| ||| ||| |||| |||||||||||||||||||    
T  42447475 ctcttttgaattcttagcaagtgtccttagggcacttgttagcataaccctaattt 42447420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 340
Target Start/End: Complemental strand, 7859201 - 7859095
Alignment:
Q  234 ttgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggaca 333  Q
    |||| ||||||||||||| |||| | |||||| |||||| |  ||||||||| ||| |||| |||||| |||| |||| ||||||| |  | ||||||||    
T  7859201 ttgtgtattcaacacattaaaacattaaaaagtaactttttcaacataaaatatatcaattgttttcttttttaaatctttaacaaatatcttaaggaca 7859102  T
Q  334 ctcgtta 340  Q
    || ||||    
T  7859101 cttgtta 7859095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 326
Target Start/End: Complemental strand, 14955295 - 14955209
Alignment:
Q  240 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccct 326  Q
    |||||||||||||||| || |||||| |||||| | |  |||||| || ||| ||||||    ||||||||||||||||||||||||    
T  14955295 attcaacacattgaaagtttaaaaagtaactttttctttataaaacttctaagttatttctatttttgaatccttaacaagtgccct 14955209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 315
Target Start/End: Original strand, 42964814 - 42964896
Alignment:
Q  233 attgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatcctta 315  Q
    ||||| |||||||||||||||||| |||||||  |||||| | ||||| ||| |||| |||||||| |  |||||| ||||||    
T  42964814 attgtgtattcaacacattgaaacatcaaaaaataactttttctacatgaaagttatcaattatttccatttttgagtcctta 42964896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 343
Target Start/End: Complemental strand, 13521787 - 13521678
Alignment:
Q  234 ttgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggaca 333  Q
    |||| ||||| |||||||||||| | |||||  || ||||||||||| ||| |||| ||||||||    ||||| ||||||||||||||  || |||| |    
T  13521787 ttgtgtattctacacattgaaacattaaaaaataattttatttacatgaaagttatcaattatttctatttttgtatccttaacaagtgatcttaggata 13521688  T
Q  334 ctcgttagca 343  Q
    || |||||||    
T  13521687 cttgttagca 13521678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 343
Target Start/End: Complemental strand, 13611322 - 13611213
Alignment:
Q  234 ttgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggaca 333  Q
    |||| ||||| |||||||||||| | |||||  || ||||||||||| ||| |||| ||||||||    ||||| ||||||||||||||  || |||| |    
T  13611322 ttgtgtattctacacattgaaacattaaaaaataattttatttacatgaaagttatcaattatttctatttttgtatccttaacaagtgatcttaggata 13611223  T
Q  334 ctcgttagca 343  Q
    || |||||||    
T  13611222 cttgttagca 13611213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 326
Target Start/End: Original strand, 31087061 - 31087194
Alignment:
Q  193 cacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaa 292  Q
    ||||| |||| |||| |||| || ||| ||||| ||  || |||| ||||||| ||||| |||||| |||||  |||||| | |  ||||||||| ||||    
T  31087061 cacttctttaaaagtcaaaaaaataaattttttttttaaagttgtgtattcaatacattaaaactttaaaaaaaaactttttctttataaaatttgtaaa 31087160  T
Q  293 ttattttctcttttgaatccttaacaagtgccct 326  Q
    | |||| |||||||||| |  |||||||||||||    
T  31087161 tcatttcctcttttgaacctgtaacaagtgccct 31087194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 344
Target Start/End: Complemental strand, 32203034 - 32202993
Alignment:
Q  303 ttttgaatccttaacaagtgccctaaggacactcgttagcat 344  Q
    |||||||||||||||||||||||||||| |||| | ||||||    
T  32203034 ttttgaatccttaacaagtgccctaagggcacttgctagcat 32202993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 39900337 - 39900259
Alignment:
Q  240 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattt-tctcttttgaatccttaacaa 319  Q
    |||||||||||| |||| |||||||| ||  || ||||||||||| |||| |||||||| | | |||||||||||||||||    
T  39900337 attcaacacattaaaacatcaaaaagtaa--ttttttacataaaagttatcaattatttctattttttgaatccttaacaa 39900259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 346
Target Start/End: Original strand, 29931099 - 29931215
Alignment:
Q  231 aaattgtctattcaacacattgaaacttcaaaaaggaa-ctttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaag 329  Q
    ||||||| |||||||  ||||||||||| |||||  || |||| | |||||||||||  ||||||||||  | |||||||||||||  |||| |||||||    
T  29931099 aaattgtgtattcaatgcattgaaacttaaaaaaaaaaactttttgtacataaaattcttaaattatttcttgttttgaatccttagtaagtaccctaag 29931198  T
Q  330 gacactcgttagcataa 346  Q
      |||| ||||| ||||    
T  29931199 agcacttgttagtataa 29931215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 192 - 322
Target Start/End: Complemental strand, 5682450 - 5682320
Alignment:
Q  192 acacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataa 291  Q
    ||||||||||| || || ||| |||||||||||| ||   |||||| || ||||||||||||||||| ||||  ||||||| |  |||||||||||||||    
T  5682450 acacttgtttaaaaattcaaaaaagaaactttttattgagaattgtatagtcaacacattgaaacttaaaaatagaactttttccacataaaatttataa 5682351  T
Q  292 attattttctcttttgaatccttaacaagtg 322  Q
    || |||| |||||||||||| ||||||||||    
T  5682350 ataatttactcttttgaatctttaacaagtg 5682320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 330
Target Start/End: Original strand, 1863093 - 1863230
Alignment:
Q  193 cacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaa 292  Q
    |||||||| ||||||| ||| || ||| ||| |||| |||||  | ||||||||||||||||| || |||||| |||||||| ||||||||| || ||||    
T  1863093 cacttgttaagaagtttaaaaaataaattttatcttggaaatgatgtattcaacacattgaaagtttaaaaagtaactttatctacataaaacttgtaaa 1863192  T
Q  293 ttattttctct-tttgaatccttaacaagtgccctaagg 330  Q
    ||| ||||| | |||||||||||||| ||||||||||||    
T  1863193 tta-tttctatatttgaatccttaactagtgccctaagg 1863230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 4822614 - 4822528
Alignment:
Q  231 aaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaac 317  Q
    ||||||| |||||| ||||||||||||| ||||| ||||||| | |||||||||||||||||| |||| ||||||| |||| |||||    
T  4822614 aaattgtgtattcaccacattgaaacttaaaaaatgaactttttctacataaaatttataaatcatttcctcttttaaatctttaac 4822528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 298
Target Start/End: Original strand, 19608774 - 19608870
Alignment:
Q  202 agaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattt 298  Q
    ||||||| ||| | |||||||| |||| ||| ||||||||||||||||||||||| | |||||| |||||| | ||||||||| |||| ||||||||    
T  19608774 agaagttcaaaaaggaaactttatcttggaatttgtctattcaacacattgaaacattaaaaagtaactttttctacataaaaattatcaattattt 19608870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 260 - 350
Target Start/End: Complemental strand, 950707 - 950617
Alignment:
Q  260 aaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataaccct 350  Q
    |||||| |||||| | |||||||||| ||  |||| || ||| ||||||||||||||| |||||||||||| |||| ||||||||||||||    
T  950707 aaaaagtaactttttctacataaaatctagcaattgttatcttttttgaatccttaactagtgccctaagggcacttgttagcataaccct 950617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 293
Target Start/End: Complemental strand, 26449360 - 26449260
Alignment:
Q  193 cacttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaa 292  Q
    |||||||||||||||  ||| ||||||    |||||| ||||||| ||||||| |||||||||||| |||||| || ||| | |||||||||||||||||    
T  26449360 cacttgtttagaagtccaaagaagaaaaaaattcttaaaaattgtgtattcaaaacattgaaactttaaaaagaaattttttctacataaaatttataaa 26449261  T
Q  293 t 293  Q
    |    
T  26449260 t 26449260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 320
Target Start/End: Original strand, 38328652 - 38328747
Alignment:
Q  225 tcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaag 320  Q
    ||||| || |||| |||| || |||||||||| | |||||| |||||| || |||||||||| || |||||||| || ||||||||||||||||||    
T  38328652 tcttataagttgtgtatttaatacattgaaacattaaaaagtaacttttttaacataaaattcatgaattatttccttttttgaatccttaacaag 38328747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 352
Target Start/End: Complemental strand, 8611832 - 8611721
Alignment:
Q  241 ttcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgtta 340  Q
    |||||||||||||||| |||||||| |||||| | ||||| ||| |||| |||| ||| |  ||||||||||||||| |||| | | ||| |||| ||||    
T  8611832 ttcaacacattgaaacatcaaaaagcaactttttctacatgaaaattatcaattgtttccaattttgaatccttaacgagtgtcattagggcacttgtta 8611733  T
Q  341 gcataaccctaa 352  Q
    |||  |||||||    
T  8611732 gcaagaccctaa 8611721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 321
Target Start/End: Complemental strand, 27695175 - 27695128
Alignment:
Q  274 tttacataaaatttataaattattttctcttttgaatccttaacaagt 321  Q
    |||||||||||||||| ||||||||||  |||||||||||||||||||    
T  27695175 tttacataaaatttattaattattttcatttttgaatccttaacaagt 27695128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 326
Target Start/End: Original strand, 9765011 - 9765061
Alignment:
Q  276 tacataaaatttataaattattttctcttttgaatccttaacaagtgccct 326  Q
    ||||||||| |||  |||||||| |||||||||||||||||||||||||||    
T  9765011 tacataaaacttaacaattatttcctcttttgaatccttaacaagtgccct 9765061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 350
Target Start/End: Original strand, 9857801 - 9857920
Alignment:
Q  230 gaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaag 329  Q
    ||||||||  ||| |||||||||||||  ||||||| |||||| | ||| |||| || || ||| ||||    ||||||||||||| |||||||||| ||    
T  9857801 gaaattgtgcatttaacacattgaaacaacaaaaag-aactttttctacctaaatttcatcaatcatttctaattttgaatccttagcaagtgcccttag 9857899  T
Q  330 gacactcgttagcataaccct 350  Q
    | |||| ||||||||||||||    
T  9857900 ggcacttgttagcataaccct 9857920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 299
Target Start/End: Original strand, 14688761 - 14688820
Alignment:
Q  240 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattatttt 299  Q
    |||||||||||||||| || |||||  || ||| ||||||||||| ||||||||||||||    
T  14688761 attcaacacattgaaagtttaaaaactaattttttttacataaaacttataaattatttt 14688820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 322
Target Start/End: Complemental strand, 23245455 - 23245412
Alignment:
Q  279 ataaaatttataaattattttctcttttgaatccttaacaagtg 322  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||    
T  23245455 ataaaatttataaattatttcctcttttgaattcttaacgagtg 23245412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 340
Target Start/End: Original strand, 42035766 - 42035876
Alignment:
Q  231 aaattgtctattcaacacattgaaact-tcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaag 329  Q
    ||||||| |||| |||||||||||| | | |||||| |||||||||||||||||| |||| |||| | |    ||||| ||||||||||||||  ||||     
T  42035766 aaattgtgtatttaacacattgaaaatattaaaaagcaactttatttacataaaaattatcaattgtgtctatttttggatccttaacaagtgtgctaaa 42035865  T
Q  330 gacactcgtta 340  Q
    | |||||||||    
T  42035866 ggcactcgtta 42035876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 341
Target Start/End: Original strand, 6662097 - 6662194
Alignment:
Q  244 aacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttag 341  Q
    |||||||||||| || || ||  |||||| | ||||| |||||||||||||||||    |||||||||||||| || ||||| || ||||||| ||||    
T  6662097 aacacattgaaagtttaataaataactttttctacatcaaatttataaattatttcaatttttgaatccttaataaatgccccaaagacactccttag 6662194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 326
Target Start/End: Complemental strand, 844828 - 844736
Alignment:
Q  234 ttgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccct 326  Q
    |||| |||||||||||||||||| | |||||| ||| || |   ||||||||| || |||| ||| |  |||| |||||||||||||||||||    
T  844828 ttgtgtattcaacacattgaaacattaaaaagtaacattttcatcataaaattcatcaattgtttccatttttaaatccttaacaagtgccct 844736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 7112063 - 7112016
Alignment:
Q  302 cttttgaatccttaacaagtgccctaaggacactcgttagcataaccct 350  Q
    ||||| ||||||||||||||||||||||| |||| |||| |||||||||    
T  7112063 cttttaaatccttaacaagtgccctaagg-cacttgttatcataaccct 7112016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 291
Target Start/End: Complemental strand, 24111634 - 24111558
Alignment:
Q  215 agaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataa 291  Q
    ||||| ||| |||||| |||||| |||| ||||||||||||||| ||||| | ||||| | ||||| ||| ||||||    
T  24111634 agaaagtttatcttaggaattgtgtatttaacacattgaaactttaaaaatggactttttctacatcaaacttataa 24111558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 352
Target Start/End: Original strand, 34103305 - 34103408
Alignment:
Q  248 cattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggacactcgttagcataac 347  Q
    ||||||||||| ||||| ||||  | | ||||||| ||||| |||| |||  ||||||||||||| ||||||||| ||| ||  |||  |||||||||||    
T  34103305 cattgaaactttaaaaaagaaccgtttctacataagatttacaaat-attccctcttttgaatccataacaagtgtccttagagcacatgttagcataac 34103403  T
Q  348 cctaa 352  Q
    |||||    
T  34103404 cctaa 34103408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 196 - 327
Target Start/End: Complemental strand, 159261 - 159130
Alignment:
Q  196 ttgtttagaagttaaaacaagaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaatta 295  Q
    ||||||| ||||| ||| |||||||||||| ||  || || | | |||| |||||||||| |||||||   ||| || |||| || ||||| ||||||||    
T  159261 ttgtttaaaagttgaaataagaaactttttattgaaacttttgttttcaccacattgaaaattcaaaattaaacattttttagatgaaattcataaatta 159162  T
Q  296 ttttctcttttgaatccttaacaagtgcccta 327  Q
    |||||| |||||||||||||||||||| ||||    
T  159161 ttttcttttttgaatccttaacaagtgtccta 159130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 343
Target Start/End: Complemental strand, 21273743 - 21273638
Alignment:
Q  239 tattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattt-tctcttttgaatccttaacaagtgccctaaggacactcg 337  Q
    |||||||||||| |||| || |||||| |||||||| |||| ||||||| |||||||||| | | | ||||||||||||| | || |||||| ||||| |    
T  21273743 tattcaacacatggaaagtttaaaaagtaactttatctacacaaaatttgtaaattatttctatttgttgaatccttaactaatgtcctaagaacactgg 21273644  T
Q  338 ttagca 343  Q
    ||||||    
T  21273643 ttagca 21273638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 218 - 326
Target Start/End: Complemental strand, 6067607 - 6067499
Alignment:
Q  218 aactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaac 317  Q
    |||||| ||||||||||||| ||||||||  ||||||   | |||||| |||||| | ||||| |||||||  ||||||||||| |||| | || |||||    
T  6067607 aactttatcttagaaattgtgtattcaacttattgaacgattaaaaagaaactttttctacatgaaatttaacaattattttcttttttaagtctttaac 6067508  T
Q  318 aagtgccct 326  Q
    |||||||||    
T  6067507 aagtgccct 6067499  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 314
Target Start/End: Complemental strand, 22720474 - 22720440
Alignment:
Q  280 taaaatttataaattattttctcttttgaatcctt 314  Q
    |||||||||||||||||||||||||||||||||||    
T  22720474 taaaatttataaattattttctcttttgaatcctt 22720440  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 319
Target Start/End: Original strand, 30775224 - 30775325
Alignment:
Q  218 aactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaac 317  Q
    |||||| | ||||||||||| ||||||||  |||||||  | |||||  |||||| | || || |||||||  ||||||||||| |||||||||||||||    
T  30775224 aactttattttagaaattgtatattcaacttattgaaagattaaaaaataactttttctatatgaaatttaacaattattttcttttttgaatccttaac 30775323  T
Q  318 aa 319  Q
    ||    
T  30775324 aa 30775325  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 32870385 - 32870442
Alignment:
Q  1 ttggttgagtgggtaagtgtta--ccaccgtatagagttcatatattactccctccttct 58  Q
    ||||||||||||||||||||||  |||||  |||||||| ||||||||||||||||||||    
T  32870385 ttggttgagtgggtaagtgttataccacc--atagagtttatatattactccctccttct 32870442  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 353
Target Start/End: Original strand, 29283202 - 29283313
Alignment:
Q  242 tcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctctt-ttgaatccttaacaagtgccctaaggacactcgtta 340  Q
    |||| |||||||||| | |||||  ||||| || ||||||||||| || || ||||| || || |||||| ||||||||||||  |||||||||||||||    
T  29283202 tcaagacattgaaacattaaaaaacaacttaatctacataaaattgatcaactattt-ctattcttgaattcttaacaagtgctttaaggacactcgtta 29283300  T
Q  341 gcataaccctaat 353  Q
     | ||||||||||    
T  29283301 acgtaaccctaat 29283313  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 335
Target Start/End: Complemental strand, 30456877 - 30456773
Alignment:
Q  231 aaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaagg 330  Q
    |||||||  |||||| | ||||||| || |||||| |||||| | |||  ||||||||| |||||||| |  ||||| |||||||||||||||| |||||    
T  30456877 aaattgtgcattcaatatattgaaattttaaaaagtaactttttatactaaaaatttatcaattatttccatttttgtatccttaacaagtgccttaagg 30456778  T
Q  331 acact 335  Q
     ||||    
T  30456777 gcact 30456773  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 319
Target Start/End: Original strand, 9752633 - 9752676
Alignment:
Q  276 tacataaaatttataaattattttctcttttgaatccttaacaa 319  Q
    ||||||||| |||||||| ||||||||||||||||| |||||||    
T  9752633 tacataaaacttataaatcattttctcttttgaatctttaacaa 9752676  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 322
Target Start/End: Complemental strand, 31597597 - 31597514
Alignment:
Q  240 attcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaatt-attttctcttttgaatccttaacaagtg 322  Q
    |||||||||||| |||| | |||||| |||||| | ||||||||| |||||||||  |||| | |||| |||||||||||||||    
T  31597597 attcaacacattaaaacattaaaaagtaactttttctacataaaagttataaattgtttttattttttaaatccttaacaagtg 31597514  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 355
Target Start/End: Original strand, 17590259 - 17590384
Alignment:
Q  231 aaattgtctattcaacacattgaaacttcaaaa-aggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaag 329  Q
    ||||| || |||||||||||| || ||| |||| |  |||||| | |||||||||||||||||| |||| || ||  |||| |||||||| || |||||     
T  17590259 aaattatccattcaacacattcaagcttaaaaacaaaaactttttctacataaaatttataaatcatttccttttcagaatgcttaacaaatgtcctaac 17590358  T
Q  330 gacactcgttagcataaccctaattt 355  Q
     ||||| || |||||||||| |||||    
T  17590359 aacacttgtcagcataacccaaattt 17590384  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 24265215 - 24265251
Alignment:
Q  284 atttataaattattttctcttttgaatccttaacaag 320  Q
    |||||||||| || |||||||||||||||||||||||    
T  24265215 atttataaataatcttctcttttgaatccttaacaag 24265251  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 334
Target Start/End: Original strand, 30326704 - 30326804
Alignment:
Q  234 ttgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatccttaacaagtgccctaaggaca 333  Q
    |||| |||||||||||||||||| ||||| |  |||||| | ||||| ||| |||| |||| ||  |  |||| ||||||||||||||| |||||| |||    
T  30326704 ttgtgtattcaacacattgaaacatcaaagaacaactttttctacatgaaagttatcaattgttcccatttttaaatccttaacaagtgtcctaagcaca 30326803  T
Q  334 c 334  Q
    |    
T  30326804 c 30326804  T

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Target: scaffold0954 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0954
Description:

Target: scaffold0954; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 327
Target Start/End: Original strand, 47 - 158
Alignment:
Q  216 gaaactttttcttagaaattgtctattcaacacattgaaacttcaaaaaggaactttatttacataaaatttataaattattttctcttttgaatcctta 315  Q
    |||||||| ||||| |||||||  |||||||||||||||||  ||||||| |  ||| || |||||||||| || ||| ||||    ||||| ||| |||    
T  47 gaaactttatcttaaaaattgtgcattcaacacattgaaacaacaaaaagtattttttttaacataaaattcatcaatcatttatagttttggatcatta 146  T
Q  316 acaagtgcccta 327  Q
    ||||||||||||    
T  147 acaagtgcccta 158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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