View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_low_35 (Length: 324)
Name: NF3537_low_35
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 29 - 248
Target Start/End: Original strand, 49891740 - 49891959
Alignment:
| Q |
29 |
tgaatgaaattagtgtaacaaattaaagccaaatgaataatcttttgctaattcttatgtctagaaagaatgaattaaatctcctagtaattcatgtcaa |
128 |
Q |
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| T |
49891740 |
tgaatgaaattagtgtaacaaattaaagccaaatgaataatcttttgctaattcttatgtctagaaagaatgaattaaatctcctagtaattcatgtcaa |
49891839 |
T |
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| Q |
129 |
tttcttatgtccacaatacaacaaactttacnnnnnnntaaatatgcaacaaattaattaacaaataagagaccagcctaatatagcacacaacatgcac |
228 |
Q |
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| T |
49891840 |
tttcttatgtccacaatacaacaaactttacaaaaaaataaatatgcaacaaattaattaacaaataagagaccagcctaatatagcacacaacttgcac |
49891939 |
T |
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| Q |
229 |
ctattagttgatgaatgaat |
248 |
Q |
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| T |
49891940 |
ctattagttgatgaatgaat |
49891959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 273 - 324
Target Start/End: Original strand, 49891956 - 49892007
Alignment:
| Q |
273 |
gaattaatattcaggtagatcttggatgaatcccaatccagaaggagatatc |
324 |
Q |
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| T |
49891956 |
gaattaatattcaggtagatcttggatgaatcccaatccagaaggagatatc |
49892007 |
T |
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