View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_low_37 (Length: 289)
Name: NF3537_low_37
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 25515645 - 25515923
Alignment:
| Q |
1 |
tgctgcatatattaaagtggataggatccatgattctttgatgataattaacaaaatggtggaggctggtctcaaggtggattgtatgatgacttgatta |
100 |
Q |
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| T |
25515645 |
tgctgcatatattaaagtggataggatccatgatgctttgatgataattaacaaaatggtggaggctggtctcaaggtggattgtatgatgacttgatta |
25515744 |
T |
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| Q |
101 |
agaatggtcaaactcggatcacactttgaaaa-aataagaacaaagatgaatcatagtgattctgaatccaatcccaaaaggaaagcagtgcatcctaac |
199 |
Q |
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| T |
25515745 |
agaatggtcaaactcggatcacactttgaaaaaaataagaacaaagatgaatcatagtgattctgaatccaatcccaaaaggaaagcagtgcatcctaac |
25515844 |
T |
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| Q |
200 |
atttaacagtatgacatttttctttgtagggcaatatttttgagggtctgtaattttttaaatgaatcctatagtctgt |
278 |
Q |
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| T |
25515845 |
atttaacagtatgacatttttctttgtaaggcaatatttttgagggtctgtaattttttaaatgaatcctatagtctgt |
25515923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 94 - 219
Target Start/End: Complemental strand, 25526710 - 25526588
Alignment:
| Q |
94 |
ttgattaagaatggtcaaactcggatcacactttgaaaaaataagaacaaagatgaatcatagtgattctgaatccaatcccaaaaggaaagcagtgcat |
193 |
Q |
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| T |
25526710 |
ttgattaagaatggtccaactcggatcgaactttgaaa---taagaagaatgatgaatcaaagggattctgaatccaatcccaaaaggaaagcactacat |
25526614 |
T |
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| Q |
194 |
cctaacatttaacagtatgacatttt |
219 |
Q |
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| T |
25526613 |
cctaacatttaacagtaggacatttt |
25526588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 49 - 219
Target Start/End: Complemental strand, 25534764 - 25534592
Alignment:
| Q |
49 |
taacaaaatggtggaggctggtctcaaggtggattgtatgatgacttgattaagaatggtcaaactcggatcacactttgaaaaaataaga---acaaag |
145 |
Q |
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|||||| ||| |||||| |||||||||||||| | || ||| |||||||||||||||||| ||||| | || |||||||||||| |||| | || | |
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| T |
25534764 |
taacaacatgatggagggtggtctcaaggtggttggttcgattacttgattaagaatggtccaactcaggtcgaactttgaaaaaagaagaggaagaatg |
25534665 |
T |
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| Q |
146 |
atgaatcatagtgattctgaatccaatcccaaaaggaaagcagtgcatcctaacatttaacagtatgacatttt |
219 |
Q |
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| T |
25534664 |
atgaatcaaag-gattctgaatccaatcccaaaaggaaagcactacatcctaacatttaacagtaggacatttt |
25534592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 191 - 278
Target Start/End: Complemental strand, 25541117 - 25541030
Alignment:
| Q |
191 |
catcctaacatttaacagtatgacatttttctttgtagggcaatatttttgagggtctgtaattttttaaatgaatcctatagtctgt |
278 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||| | ||||| ||| |||||||||| |||||| |
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| T |
25541117 |
catcctaacatttaacagtaggacatttttctttgtagagcaatattttgtagggtctatgattttgtaagtgaatcctattgtctgt |
25541030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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