View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_low_38 (Length: 283)
Name: NF3537_low_38
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 11998577 - 11998833
Alignment:
| Q |
19 |
gaagtttcaggcagataaatcaaagtgttcataattcaaatttgaatactagttttgtagcaactgaacctcctcaacaaacatctagtacatctcctga |
118 |
Q |
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| T |
11998577 |
gaagtttcaggcagataaatcaaagtgttcataattcaaatttgaatactagttttgtagcaactgaacctcctcaacaaacatctactacatctcctga |
11998676 |
T |
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| Q |
119 |
tcttactttgaggctttaatatttttgtatcttaattaaattctaatattagnnnnnnngtggcaataattaaacaactatatttctcatgttcattttt |
218 |
Q |
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| T |
11998677 |
tcttactttgaggctttaatatttttgtatcttaattaaattctaatattagtttttttgtggcaa----taaacaactacatttctcatgttca---tt |
11998769 |
T |
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| Q |
219 |
ctctatggacatgaaattattaattaactctacttgcattgtacaagtaattagatgtgtattt |
282 |
Q |
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| T |
11998770 |
ctctatggacatgaaattattgattaactctacttgcattgtacaagtaattagatgtgtattt |
11998833 |
T |
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