View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_low_39 (Length: 276)
Name: NF3537_low_39
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 2349813 - 2350085
Alignment:
| Q |
1 |
aattctatctaaaactcatgagctggtggtgatagctagaataaaggaaaatcccttatgcatgggaatgaatgtgtaatattattattcttgaccagca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2349813 |
aattctatctaaaactcatgagctggtggtgatagctagaataaaggaaaatcccttatgcatgggaatgaatgtgtaatattattattcttggccagca |
2349912 |
T |
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| Q |
101 |
agataaccattcacaataaataaatctttatttcaaactctgtgttgcacaacacaaaacttttacgtaatggaaacatggttcattgcacttgtttctc |
200 |
Q |
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| T |
2349913 |
agataaccattcacaataaataaatctttatttcaaactctgtgttgcacaacacaaaatttttacgtaatggaaacatggttcattgcacttgtttctc |
2350012 |
T |
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| Q |
201 |
tctgcatcatcttcctcatcagagccatcttctcctccctcaccaccaccaacaaaaccaccacaaccctccc |
273 |
Q |
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| T |
2350013 |
tctgcatcatcttcctcatcagagccatcttctcctccctcaccaccaccaacaaaaccaccgcaaccctccc |
2350085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 2329671 - 2329788
Alignment:
| Q |
159 |
acttttacgtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccaccaccaacaaaac |
258 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | | || ||| | |||||||||| ||||| |
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| T |
2329671 |
acttttacgtaatggaaacatggttcatcgcacttgtttctctctgcatcatcttcctcatcagagccaccctttcatccatttccaccaccaagaaaac |
2329770 |
T |
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| Q |
259 |
caccacaaccctcccccc |
276 |
Q |
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|||| ||||||||||||| |
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| T |
2329771 |
caccgcaaccctcccccc |
2329788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 2325965 - 2326059
Alignment:
| Q |
156 |
aaaacttttacgtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccaccacc |
250 |
Q |
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| T |
2325965 |
aaaacttttacgtgatggaaacatggttcatcgtcctcattactctttgcatcatcttcctcgtcaaagccattctctcctccttcacaaccacc |
2326059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 2302411 - 2302474
Alignment:
| Q |
157 |
aaacttttacgtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatc |
220 |
Q |
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| T |
2302411 |
aaacttttacacaatggaaacatggttcattgtcctcattactctctgcatcatcttcctcatc |
2302474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 2292805 - 2292871
Alignment:
| Q |
170 |
atggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcct |
236 |
Q |
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|||||| |||||||||||| || ||| |||| |||||||||||||| |||||||||||| |||||| |
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| T |
2292805 |
atggaaccatggttcattgtcctcgttactctttgcatcatcttccttatcagagccatcctctcct |
2292871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 2309139 - 2309215
Alignment:
| Q |
173 |
gaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccaccac |
249 |
Q |
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| T |
2309139 |
gaaacatggttcatagtcctcgttactctctgcatcatcttccttatcagagccatgctctccttcttcacaaccac |
2309215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 2320125 - 2320205
Alignment:
| Q |
170 |
atggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccaccacc |
250 |
Q |
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||||||||||||||||| | || ||| | || |||||||||||||| |||||||||||| |||||| | |||| |||||| |
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| T |
2320125 |
atggaaacatggttcatcgtcctcgttacgctatgcatcatcttccttatcagagccatcctctccttcttcacaaccacc |
2320205 |
T |
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