View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_low_56 (Length: 246)
Name: NF3537_low_56
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_low_56 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 25515406 - 25515182
Alignment:
| Q |
1 |
caataaaagtgttagagtcaacaccatgaaaagtgggaggtgtgtgattgtctaacatgtcatgaaacaagtcctaagcctcagnnnnnnncttcttcca |
100 |
Q |
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| T |
25515406 |
caataaaagtgttagagtcaacaccatgaaaagtgggaggtgtgtgattgtctaacatgtcatgaaacaagtcccaagcctcagttt-----tttttcca |
25515312 |
T |
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| Q |
101 |
gacgagagcaaaaccgtcaagagaatattgcaagtttcaggtctcatcatcgtacacttgcggttcaataaggacttataacactccatagcctccttct |
200 |
Q |
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| T |
25515311 |
gacgagagcaaaaccgtcaagagaatattgcaagtttcaggtctcatcatcgtacacttgcggttcaataaggagttataacactccatagcctccttct |
25515212 |
T |
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| Q |
201 |
ctcttctttgtacaaagcaccactgcatat |
230 |
Q |
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| T |
25515211 |
ctcttctttgtacaaagcaccactgcatat |
25515182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 205
Target Start/End: Original strand, 25535043 - 25535238
Alignment:
| Q |
2 |
aataaaagtgttagagtcaacaccatgaaaagtgggaggtgtgtgattgtctaacatgtcatgaaacaagtcctaagcctcagnnnnnnncttcttccag |
101 |
Q |
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| T |
25535043 |
aataaaagtgtcagagttgacagcatgaaaagtgggaggtgtatgattgtctaacatgccatgaaacaagtcccaagcctcggttt-----tttttccaa |
25535137 |
T |
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| Q |
102 |
acgagagcaaaaccgtcaagagaatattgcaagtttcaggtctcatcatcgtacacttgcggttcaataaggacttataacactccatagcctccttctc |
201 |
Q |
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| T |
25535138 |
acctgagcaaaatctccaagagcatattgcaagttttaggtctcatcat---acacttgcggttcaataaggagttataacactccatagcctccttatc |
25535234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 25527013 - 25527207
Alignment:
| Q |
4 |
taaaagtgttagagtcaacaccatgaaaagtgggaggtgtgtgattgtctaacatgtcatgaaacaagtcctaagcctcagnnnnnnncttc-ttccaga |
102 |
Q |
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||||||||| |||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| | |
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| T |
25527013 |
taaaagtgtcagagtcgacaccatgaaaagtggaaggcgtgtgattgtctaacatgtcatgaaacaagtcccaagcctcagtt------ttctttccata |
25527106 |
T |
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| Q |
103 |
cgagagcaaaaccgtcaagagaatattgcaagtttcaggtctcatcatcgtacacttgcggttcaataaggacttataacactccatagcctccttctct |
202 |
Q |
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| T |
25527107 |
cttgagcaaaacctccaagagaacatcgccagtttcaggtc---tcatcctacacttgcggttcaataaagacttataacactccatggcgtccttatct |
25527203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 25538156 - 25538232
Alignment:
| Q |
127 |
attgcaagtttcaggtctcatcatcgtacacttgcggttcaataaggacttataacactccatagcctccttctctcttc |
206 |
Q |
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| T |
25538156 |
attgcaagtttcaggtctcatcct---aaacttgtggttcaataaggagtcataagactccatggcttccttttctcttc |
25538232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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