View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3537_low_58 (Length: 245)

Name: NF3537_low_58
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3537_low_58
NF3537_low_58
[»] chr7 (10 HSPs)
chr7 (1-238)||(11752644-11752881)
chr7 (4-142)||(38349455-38349591)
chr7 (4-139)||(28713727-28713860)
chr7 (8-138)||(38754897-38755023)
chr7 (46-142)||(30922706-30922799)
chr7 (4-136)||(37536317-37536447)
chr7 (10-141)||(43359028-43359157)
chr7 (10-111)||(47480041-47480139)
chr7 (4-57)||(42974457-42974510)
chr7 (46-140)||(46576240-46576331)
[»] chr1 (14 HSPs)
chr1 (4-139)||(47571562-47571695)
chr1 (1-138)||(33502524-33502659)
chr1 (4-137)||(29731238-29731369)
chr1 (4-140)||(19989289-19989420)
chr1 (10-139)||(15224986-15225117)
chr1 (46-140)||(1995045-1995136)
chr1 (6-137)||(48489501-48489630)
chr1 (46-140)||(32267463-32267554)
chr1 (10-59)||(40314148-40314197)
chr1 (10-140)||(526907-527025)
chr1 (10-139)||(15066019-15066147)
chr1 (4-51)||(26041020-26041067)
chr1 (10-51)||(12907635-12907676)
chr1 (10-59)||(46845733-46845782)
[»] chr3 (5 HSPs)
chr3 (1-145)||(46135574-46135714)
chr3 (4-130)||(36674527-36674651)
chr3 (10-139)||(23004812-23004938)
chr3 (46-138)||(38247891-38247979)
chr3 (27-139)||(54413393-54413503)
[»] chr2 (6 HSPs)
chr2 (4-139)||(40216459-40216592)
chr2 (46-138)||(17823672-17823761)
chr2 (46-139)||(32599247-32599337)
chr2 (46-138)||(13696965-13697054)
chr2 (10-59)||(3121666-3121715)
chr2 (46-140)||(33555360-33555451)
[»] chr8 (11 HSPs)
chr8 (4-138)||(11904903-11905035)
chr8 (4-141)||(41075593-41075729)
chr8 (4-141)||(35200606-35200741)
chr8 (4-142)||(31774774-31774912)
chr8 (8-138)||(5749029-5749155)
chr8 (10-79)||(8368428-8368497)
chr8 (4-81)||(10592026-10592103)
chr8 (46-140)||(4076767-4076858)
chr8 (10-59)||(2599587-2599636)
chr8 (46-139)||(14342186-14342276)
chr8 (10-56)||(10391385-10391431)
[»] chr4 (14 HSPs)
chr4 (4-138)||(48525376-48525508)
chr4 (4-138)||(41277265-41277399)
chr4 (8-139)||(25783908-25784036)
chr4 (10-138)||(5817380-5817506)
chr4 (46-140)||(39631008-39631099)
chr4 (6-81)||(40947158-40947233)
chr4 (49-140)||(14149958-14150047)
chr4 (10-145)||(45995888-45996020)
chr4 (48-84)||(26719955-26719991)
chr4 (63-139)||(17044112-17044185)
chr4 (46-138)||(25164471-25164560)
chr4 (10-56)||(42179217-42179263)
chr4 (10-59)||(50498266-50498315)
chr4 (4-60)||(51579370-51579426)
[»] chr5 (9 HSPs)
chr5 (4-140)||(12248323-12248457)
chr5 (4-138)||(43100208-43100340)
chr5 (33-140)||(20151455-20151558)
chr5 (46-140)||(11247285-11247376)
chr5 (58-139)||(8076359-8076438)
chr5 (6-138)||(33687699-33687829)
chr5 (46-139)||(13988340-13988430)
chr5 (46-139)||(36890469-36890559)
chr5 (10-59)||(15285385-15285434)
[»] chr6 (7 HSPs)
chr6 (15-138)||(16718058-16718179)
chr6 (4-141)||(12748261-12748397)
chr6 (95-140)||(9521810-9521855)
chr6 (6-149)||(32720411-32720552)
chr6 (10-145)||(23916028-23916151)
chr6 (46-147)||(14313978-14314075)
chr6 (47-138)||(34792651-34792739)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 11752644 - 11752881
Alignment:
Q  1 cctacatataattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaat 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  11752644 cctacatataattgtgacatgtgttcacgtggtccccacacacataaaaaactcaccttttgtgtctctcacacactctcacatagtagcgtggtacaat 11752743  T
Q  101 gtgtgtatggagaaaaggatgtccatgaaatattatccttataaatatgacaattttggcccctccaaannnnnnnaactagaaataaaaatggtgatgc 200  Q
    ||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||        ||||||||||||||||||||||||    
T  11752744 gtgtgtatggaaaaaaagatgtccatgaaatattatccatataaatatgacaatttcggcccctccaattttttttaactagaaataaaaatggtgatgc 11752843  T
Q  201 gatatgttttaagtgacatggtagattatctgatgatg 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11752844 gatatgttttaagtgacatggtagattatctgatgatg 11752881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 142
Target Start/End: Complemental strand, 38349591 - 38349455
Alignment:
Q  4 acatataattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtg 103  Q
    ||||||||||||||||||||| || ||| |||| ||| |||||| |||||||  |||||||||||||| |||||||||||| | |  ||| |||||||||    
T  38349591 acatataattgtgacatgtgtccatgtgttccctacacacataagaaactcatcttttgtgtctctcaaacactctcacatggaa--gtggtacaatgtg 38349494  T
Q  104 tgtatggagaaaaggatgtccatgaaatattatccttat 142  Q
    ||||| ||| ||||| ||| ||||||| |||||||||||    
T  38349493 tgtatagaggaaagggtgttcatgaaacattatccttat 38349455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 28713727 - 28713860
Alignment:
Q  4 acatataattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtg 103  Q
    ||||||||||||||||||||| || ||| |||| ||| |||||| |||||||  |||||||||||||| ||||||||||||   |  ||| |||||| ||    
T  28713727 acatataattgtgacatgtgtccatgtgttccctacacacataagaaactcatcttttgtgtctctcaaacactctcacat--gaaagtggtacaatatg 28713824  T
Q  104 tgtatggagaaaaggatgtccatgaaatattatcct 139  Q
    ||||| ||||||||| ||| ||||||| ||||||||    
T  28713825 tgtatagagaaaagggtgttcatgaaacattatcct 28713860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 38755023 - 38754897
Alignment:
Q  8 ataattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgta 107  Q
    |||||| |||||||||| || ||| |||||||| ||| |||||||||||||||  |||||||||||||||||||||   | | ||| || ||||| ||||    
T  38755023 ataattatgacatgtgtccatgtgatccccacacaca-aaaaaactcacatttattgtctctcacacactctcaca---tggggtggtataatgtatgta 38754928  T
Q  108 tggagaaaaggatgtccatgaaatattatcc 138  Q
    |||| |||| | ||| |||||||||||||||    
T  38754927 tggaaaaaaaggtgtacatgaaatattatcc 38754897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 142
Target Start/End: Complemental strand, 30922799 - 30922706
Alignment:
Q  46 aaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtatggagaaaaggatgtccatgaaatattatccttat 142  Q
    ||||||||||||| |  |||||||||||||||||||||| |    ||| ||||||||||||||||| ||||| |||| ||||||| |||||||||||    
T  30922799 aaaaaactcacatgtattgtctctcacacactctcacatgga---gtggtacaatgtgtgtatggaaaaaagtatgtacatgaaacattatccttat 30922706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 136
Target Start/End: Complemental strand, 37536447 - 37536317
Alignment:
Q  4 acatataattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtg 103  Q
    ||||||||||||||||||||| || | |||||| ||| ||| || |||||||  |||||| ||||||| ||||||||||||   |  ||| |||||||||    
T  37536447 acatataattgtgacatgtgtccatgcggtccctacacacacaagaaactcatcttttgtatctctcaaacactctcacat--gaaagtggtacaatgtg 37536350  T
Q  104 tgtatggagaaaaggatgtccatgaaatattat 136  Q
    ||||| ||||||| | ||| ||||||| |||||    
T  37536349 tgtatagagaaaatggtgttcatgaaacattat 37536317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 141
Target Start/End: Original strand, 43359028 - 43359157
Alignment:
Q  10 aattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtatg 109  Q
    |||||||||| |||| ||||||||||  ||| | | || ||| |||  |||| | ||||||||||||||||||||   || ||| |||| ||||||||||    
T  43359028 aattgtgacacgtgtccacgtggtcctaacacataaaagaaattcattttttttatctctcacacactctcacatg--agggtgatacattgtgtgtatg 43359125  T
Q  110 gagaaaaggatgtccatgaaatattatcctta 141  Q
    ||||||| | |||| |||||| ||||||||||    
T  43359126 gagaaaatggtgtcaatgaaacattatcctta 43359157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 47480139 - 47480041
Alignment:
Q  10 aattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtatg 109  Q
    ||||||||||||||| ||  |||| |||||| ||| |||||||| ||||||  ||||||| |||||||||||||| |  | ||| |||||||||||||||    
T  47480139 aattgtgacatgtgtccatatggttcccacacaca-aaaaaacttacatttattgtctcttacacactctcacatgg--gggtggtacaatgtgtgtatg 47480043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 42974510 - 42974457
Alignment:
Q  4 acatataattgtgacatgtgttcacgtggtccccacagacataaaaaactcaca 57  Q
    ||||| ||||||||||||||||||  ||||||||||| ||| ||||||||||||    
T  42974510 acatacaattgtgacatgtgttcatatggtccccacacacacaaaaaactcaca 42974457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 46576331 - 46576240
Alignment:
Q  46 aaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtatggagaaaaggatgtccatgaaatattatcctt 140  Q
    |||||| |||||| |  |||||||||||||||||||||| |    ||| ||||||||||||||||| |||||  ||| ||||||| |||||||||    
T  46576331 aaaaaagtcacatgtattgtctctcacacactctcacatgga---gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 46576240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 47571695 - 47571562
Alignment:
Q  4 acatataattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtg 103  Q
    ||||||||||||||||||||| || |||||||| ||| |||||| |||||||  |||||||||||||| |||||||||||| | |  ||| |||||||||    
T  47571695 acatataattgtgacatgtgtccatgtggtccctacacacataagaaactcatcttttgtgtctctcaaacactctcacatggaa--gtggtacaatgtg 47571598  T
Q  104 tgtatggagaaaaggatgtccatgaaatattatcct 139  Q
    ||||| ||| ||||| ||| ||||||| ||||||||    
T  47571597 tgtatagaggaaagggtgttcatgaaacattatcct 47571562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 33502659 - 33502524
Alignment:
Q  1 cctacatataattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaat 100  Q
    |||||||  ||||||||||| ||||||| ||||| ||||| ||| |||||||||||||||| | ||| |||||||||||||||||| || ||| ||||||    
T  33502659 cctacatgcaattgtgacatatgttcacatggtctccacacacacaaaaaactcacattttatatctttcacacactctcacatag-ag-gtggtacaat 33502562  T
Q  101 gtgtgtatggagaaaaggatgtccatgaaatattatcc 138  Q
    || |||| | |||||||||||| ||||||| |||||||    
T  33502561 gtatgtacgaagaaaaggatgttcatgaaacattatcc 33502524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 29731238 - 29731369
Alignment:
Q  4 acatataattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtg 103  Q
    ||||||||||||||||||||| || |||||||| ||| ||| || ||| |||  |||||||||||||| |||||||||||| | |  ||| |||||||||    
T  29731238 acatataattgtgacatgtgtccatgtggtccctacacacacaagaaattcatcttttgtgtctctcaaacactctcacatggaa--gtgatacaatgtg 29731335  T
Q  104 tgtatggagaaaaggatgtccatgaaatattatc 137  Q
    ||||| ||||||||| ||| ||||||| ||||||    
T  29731336 tgtatagagaaaagggtgttcatgaaacattatc 29731369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 140
Target Start/End: Original strand, 19989289 - 19989420
Alignment:
Q  4 acatataattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtg 103  Q
    ||||| || |||||||||||| || |||||  |||||  ||||||||||| ||||||||||||||||||||||||||||||   || ||| |||||||||    
T  19989289 acatacaagtgtgacatgtgtccatgtggtttccaca--cataaaaaacttacattttgtgtctctcacacactctcacat--gagagtggtacaatgtg 19989384  T
Q  104 tgtatggagaaaaggatgtccatgaaatattatcctt 140  Q
    ||||| ||||||||  |||| |||||| |||||||||    
T  19989385 tgtat-gagaaaagagtgtctatgaaacattatcctt 19989420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 15225117 - 15224986
Alignment:
Q  10 aattgtgacatgtgttcacgtggtccccacagacata--aaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgta 107  Q
    ||||||||||| ||| ||| ||||||||||| ||| |  ||||||||||||||| | ||||||||||||||||||||||  | |   ||| ||||| |||    
T  15225117 aattgtgacatatgtccacatggtccccacacacacacaaaaaactcacattttatatctctcacacactctcacatagaggtggtatacgatgtgcgta 15225018  T
Q  108 tggagaaaaggatgtccatgaaatattatcct 139  Q
     |||||||||| ||| ||||||| ||||||||    
T  15225017 cggagaaaagggtgttcatgaaacattatcct 15224986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 140
Target Start/End: Original strand, 1995045 - 1995136
Alignment:
Q  46 aaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtatggagaaaaggatgtccatgaaatattatcctt 140  Q
    ||||||||||||| |  |||||||||||||||||||||| |    ||| ||||||||||||||||| |||||  ||| ||||||| |||||||||    
T  1995045 aaaaaactcacatgtattgtctctcacacactctcacatgga---gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 1995136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 137
Target Start/End: Original strand, 48489501 - 48489630
Alignment:
Q  6 atataattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtg 105  Q
    ||||||||||||||| ||| || |||||||| ||  ||| || |||||||  |||||||||||||| ||||| |||||| | |  ||| |||||||| ||    
T  48489501 atataattgtgacatctgtccatgtggtccctacgcacacaagaaactcatcttttgtgtctctcaaacactatcacatggaa--gtggtacaatgtatg 48489598  T
Q  106 tatggagaaaaggatgtccatgaaatattatc 137  Q
    ||| ||||||| | ||| ||||||| ||||||    
T  48489599 tatagagaaaatggtgttcatgaaacattatc 48489630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 32267554 - 32267463
Alignment:
Q  46 aaaaaactcacattttgtgtctctcacacactctcacat--agtagcgtgttacaatgtgtgtatggagaaaaggatgtccatgaaatattatcctt 140  Q
    ||||||||||||| |  || |||||||||||||||||||  |||||     ||||||||||||||||| |||||  ||| |||||||||||||||||    
T  32267554 aaaaaactcacatgtattggctctcacacactctcacatggagtag-----tacaatgtgtgtatggaaaaaagtgtgtacatgaaatattatcctt 32267463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 40314148 - 40314197
Alignment:
Q  10 aattgtgacatgtgttcacgtggtccccacagacataaaaaactcacatt 59  Q
    ||||||||||||||| || |||||||||||| ||| ||||||||||||||    
T  40314148 aattgtgacatgtgtccatgtggtccccacacacacaaaaaactcacatt 40314197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 527025 - 526907
Alignment:
Q  10 aattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtatg 109  Q
    ||||||||||||||| || |||||||||||| ||| || ||||||||||          |||||||||||||||| | |  ||| ||||  |||||||||    
T  527025 aattgtgacatgtgtccatgtggtccccacatacacaagaaactcacat----------tcacacactctcacatggaa--gtggtacatagtgtgtatg 526938  T
Q  110 gagaaaaggatgtccatgaaatattatcctt 140  Q
    ||||||||| ||| ||||||| |||||||||    
T  526937 gagaaaagggtgttcatgaaacattatcctt 526907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 15066147 - 15066019
Alignment:
Q  10 aattgtgacatgtgttcacgtggtccccacagacataaa-aaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtat 108  Q
    ||||||||||||||| || ||| |||  ||| ||| ||| ||||||| ||||  ||||||||||||||||||||||   || ||| |||| ||| |||||    
T  15066147 aattgtgacatgtgtccatgtgatccgtacacacaaaaagaaactcatatttattgtctctcacacactctcacat--gagagtggtacattgtatgtat 15066050  T
Q  109 ggagaaaaggatgtccatgaaatattatcct 139  Q
    ||| |||||  ||| ||||||| ||||||||    
T  15066049 ggaaaaaagagtgttcatgaaacattatcct 15066019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 26041020 - 26041067
Alignment:
Q  4 acatataattgtgacatgtgttcacgtggtccccacagacataaaaaa 51  Q
    ||||| ||||||||||||||| ||||||||||||||| ||| ||||||    
T  26041020 acatacaattgtgacatgtgtccacgtggtccccacacacaaaaaaaa 26041067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 12907676 - 12907635
Alignment:
Q  10 aattgtgacatgtgttcacgtggtccccacagacataaaaaa 51  Q
    |||||||||||||||| | |||||||||||| ||||||||||    
T  12907676 aattgtgacatgtgtttatgtggtccccacacacataaaaaa 12907635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 46845782 - 46845733
Alignment:
Q  10 aattgtgacatgtgttcacgtggtccccacagacataaaaaactcacatt 59  Q
    ||||||||||||||| || |||||||||||| ||| || |||||||||||    
T  46845782 aattgtgacatgtgtccatgtggtccccacatacacaagaaactcacatt 46845733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 46135574 - 46135714
Alignment:
Q  1 cctacatataattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaat 100  Q
    |||||||| ||||||||||||||| | | |||| |||| | ||| ||||||||||  |||| | ||||||||||||||||||||||  | ||| ||||||    
T  46135574 cctacatacaattgtgacatgtgtccgcatggttcccatatacacaaaaaactca--ttttatatctctcacacactctcacatag--gggtggtacaat 46135669  T
Q  101 gtgtgtatggagaaaaggatgtccatgaaatattatccttataaa 145  Q
    |||||||||||||||| ||||| ||||||| |||||||| |||||    
T  46135670 gtgtgtatggagaaaatgatgttcatgaaacattatcctaataaa 46135714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 36674651 - 36674527
Alignment:
Q  4 acatataattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtg 103  Q
    ||||||||||||||||||||| || ||| || | ||| |||||| |||||||  |||| ||||||||| ||||||||| || | |  ||| |||||||||    
T  36674651 acatataattgtgacatgtgtccatgtgatcactacacacataagaaactcatcttttatgtctctcaaacactctcatatggaa--gtggtacaatgtg 36674554  T
Q  104 tgtatggagaaaaggatgtccatgaaa 130  Q
    ||||| ||||||||||||| |||||||    
T  36674553 tgtatagagaaaaggatgttcatgaaa 36674527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 23004812 - 23004938
Alignment:
Q  10 aattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtatg 109  Q
    ||||||||||||| |||| |||||||||||| |||| |||||||||||||      || |||||||||||||||| | |  ||| | ||  |||||||||    
T  23004812 aattgtgacatgtattcatgtggtccccacacacat-aaaaactcacattcacacactttcacacactctcacatggaa--gtggtgcatagtgtgtatg 23004908  T
Q  110 gagaaaaggatgtccatgaaatattatcct 139  Q
    ||||||||| ||| ||||||| ||||||||    
T  23004909 gagaaaagggtgttcatgaaacattatcct 23004938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 138
Target Start/End: Original strand, 38247891 - 38247979
Alignment:
Q  46 aaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtatggagaaaaggatgtccatgaaatattatcc 138  Q
    |||||| |||||| |  |||||||||||||||||||||   ||| ||| ||||||||||||||||| |||||  ||| ||||||| |||||||    
T  38247891 aaaaaagtcacatgtattgtctctcacacactctcaca---tagagtggtacaatgtgtgtatgga-aaaagtgtgtacatgaaacattatcc 38247979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 54413503 - 54413393
Alignment:
Q  27 acgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttaca-atgtgtgtatggagaaaaggatgtcca 125  Q
    |||||||||| |||  || |||||| |||| |||| ||||||||||||||||||||||   || ||| |||| |  |||||||| |||||||| ||||||    
T  54413503 acgtggtccctacatgcacaaaaaattcactttttttgtctctcacacactctcacat--gagggtggtacacaaatgtgtatgaagaaaagggtgtcca 54413406  T
Q  126 tgaaatattatcct 139  Q
    || |||||||||||    
T  54413405 tg-aatattatcct 54413393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 40216459 - 40216592
Alignment:
Q  4 acatataattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtg 103  Q
    ||||||||||||||||||||| || |||||||| ||| |||||| |||||||  |||| ||||||||| |||||||||||| | |  ||| |||||||||    
T  40216459 acatataattgtgacatgtgtccatgtggtccctacacacataagaaactcatcttttatgtctctcaaacactctcacatggaa--gtggtacaatgtg 40216556  T
Q  104 tgtatggagaaaaggatgtccatgaaatattatcct 139  Q
    ||||| ||| ||||| ||| ||||||| ||||||||    
T  40216557 tgtatagaggaaagggtgttcatgaaacattatcct 40216592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 138
Target Start/End: Original strand, 17823672 - 17823761
Alignment:
Q  46 aaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtatggagaaaaggatgtccatgaaatattatcc 138  Q
    ||||||||||||| |  |||||||||||||||||||||| |    ||| ||||||||||||||||| |||||  ||| ||||||| |||||||    
T  17823672 aaaaaactcacatgtattgtctctcacacactctcacatgga---gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 17823761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 139
Target Start/End: Complemental strand, 32599337 - 32599247
Alignment:
Q  46 aaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtatggagaaaaggatgtccatgaaatattatcct 139  Q
    ||||||||||||| |  ||||| |||||||||||||||| |    ||| ||||||||||||||||| |||||  ||| ||||||| ||||||||    
T  32599337 aaaaaactcacatgtattgtctgtcacacactctcacatgga---gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 32599247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 138
Target Start/End: Complemental strand, 13697054 - 13696965
Alignment:
Q  46 aaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtatggagaaaaggatgtccatgaaatattatcc 138  Q
    |||||| |||||| |  |||||||||||||||||||||| |    ||| ||||||||||||||||| |||||  ||| ||||||| |||||||    
T  13697054 aaaaaagtcacatgtattgtctctcacacactctcacatgga---gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 13696965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 3121666 - 3121715
Alignment:
Q  10 aattgtgacatgtgttcacgtggtccccacagacataaaaaactcacatt 59  Q
    ||||||||||||||| || |||||||||||| ||| || |||||||||||    
T  3121666 aattgtgacatgtgtccatgtggtccccacatacacaagaaactcacatt 3121715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 33555451 - 33555360
Alignment:
Q  46 aaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtatggagaaaaggatgtccatgaaatattatcctt 140  Q
    ||||||||||||| |  ||||| ||||||| |||||||| |    ||| ||||||||||||||||| |||||  ||| ||||||| |||||||||    
T  33555451 aaaaaactcacatgtattgtctgtcacacattctcacatgga---gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 33555360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 11904903 - 11905035
Alignment:
Q  4 acatataattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtg 103  Q
    ||||||||||||||||||||| || |||||||| ||  ||| || |||||||  |||||||||||||| |||||||||||| | |  ||| |||||||||    
T  11904903 acatataattgtgacatgtgtccatgtggtccctactcacacaagaaactcatcttttgtgtctctcaaacactctcacatggaa--gtggtacaatgtg 11905000  T
Q  104 tgtatggagaaaaggatgtccatgaaatattatcc 138  Q
    ||||| ||||||||| ||| ||||||| |||||||    
T  11905001 tgtatagagaaaagggtgttcatgaaacattatcc 11905035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 41075729 - 41075593
Alignment:
Q  4 acatataattgtgacatgtgttcacgtggtccccacagacataaaaaa--ctcacattttgtgtctctcacacactctcacatagtagcgtgttacaatg 101  Q
    ||||| |||||||||||||||||| |||||||||||| | | ||||||  |||||||||||||||| ||||||||||||||||  ||  ||| |||||||    
T  41075729 acatacaattgtgacatgtgttcatgtggtccccacaaaaaaaaaaaaaactcacattttgtgtctttcacacactctcacatgata--gtggtacaatg 41075632  T
Q  102 tgtgtatggagaaaaggatgtccatgaaatattatcctta 141  Q
    ||||||| ||||||| | |||| | |||| ||||||||||    
T  41075631 tgtgtat-gagaaaatggtgtctacgaaacattatcctta 41075593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 35200606 - 35200741
Alignment:
Q  4 acatataattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtg 103  Q
    ||||||||||||||||||||| || | |||||| ||| | | || |||||||  |||||||||||||| |||||||||||| | |  ||| |||||||||    
T  35200606 acatataattgtgacatgtgtccatgcggtccctacacatacaagaaactcatcttttgtgtctctcaaacactctcacatggaa--gtggtacaatgtg 35200703  T
Q  104 tgtatggagaaaaggatgtccatgaaatattatcctta 141  Q
    ||||| ||||||||| ||| ||| ||| ||||||||||    
T  35200704 tgtatagagaaaagggtgttcatcaaacattatcctta 35200741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 142
Target Start/End: Original strand, 31774774 - 31774912
Alignment:
Q  4 acatataattgtgacatgtgttcacgtggtccccac---agacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaat 100  Q
    ||||| |||||||||||||||||| |||||||||||   | | | |||||||||||||||||||||| ||||||||||||||||  ||  ||| ||||||    
T  31774774 acatacaattgtgacatgtgttcatgtggtccccacaaaaaaaaaaaaaaactcacattttgtgtctttcacacactctcacatgata--gtggtacaat 31774871  T
Q  101 gtgtgtatggagaaaaggatgtccatgaaatattatccttat 142  Q
    |||||||| |||||||   |||| | |||| |||||||||||    
T  31774872 gtgtgtat-gagaaaatagtgtctacgaaacattatccttat 31774912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 5749155 - 5749029
Alignment:
Q  8 ataattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgta 107  Q
    |||||| |||||||||| || ||| |||||||| ||| |||||||| ||||||  |||||||||||||||||||||   | | ||| || ||||| ||||    
T  5749155 ataattatgacatgtgtccatgtgatccccacacaca-aaaaaacttacatttattgtctctcacacactctcaca---tggggtggtataatgtatgta 5749060  T
Q  108 tggagaaaaggatgtccatgaaatattatcc 138  Q
    || | |||| ||||| |||||||||||||||    
T  5749059 tgaaaaaaaagatgtacatgaaatattatcc 5749029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 8368497 - 8368428
Alignment:
Q  10 aattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactct 79  Q
    ||||||||||||||| ||||||||||||| | | | |||||| |||| |||| |||||||||||||||||    
T  8368497 aattgtgacatgtgtccacgtggtccccatacaaaaaaaaaaatcactttttttgtctctcacacactct 8368428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 10592026 - 10592103
Alignment:
Q  4 acatataattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctca 81  Q
    ||||||||||||||||||||| || |||||| | ||| ||| || |||||||  |||||||||||||| |||||||||    
T  10592026 acatataattgtgacatgtgtccatgtggtctctacacacacaagaaactcatcttttgtgtctctcaaacactctca 10592103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 4076858 - 4076767
Alignment:
Q  46 aaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtatggagaaaaggatgtccatgaaatattatcctt 140  Q
    ||||||||||||| |  |||||||||||||||||||||   ||| ||| |||||| |||||||||| |||||  ||| ||||||| |||||||||    
T  4076858 aaaaaactcacatgtattgtctctcacacactctcaca---tagagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcctt 4076767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 2599587 - 2599636
Alignment:
Q  10 aattgtgacatgtgttcacgtggtccccacagacataaaaaactcacatt 59  Q
    |||||||||||||||||| |||||||||||| ||| || |||||||||||    
T  2599587 aattgtgacatgtgttcatgtggtccccacatacacaagaaactcacatt 2599636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 139
Target Start/End: Complemental strand, 14342276 - 14342186
Alignment:
Q  46 aaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtatggagaaaaggatgtccatgaaatattatcct 139  Q
    |||||| |||||| |  |||||||||||||||||||||| |    ||| ||||||||||||||||| |||||  ||| ||||||| ||||||||    
T  14342276 aaaaaattcacatgtattgtctctcacacactctcacatgga---gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 14342186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 10391431 - 10391385
Alignment:
Q  10 aattgtgacatgtgttcacgtggtccccacagacataaaaaactcac 56  Q
    ||||||||||||||| || |||||||||||| |||||| ||||||||    
T  10391431 aattgtgacatgtgtccatgtggtccccacacacataagaaactcac 10391385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 48525376 - 48525508
Alignment:
Q  4 acatataattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtg 103  Q
    |||||||||||||||||||||||| ||| |||| ||| |||||| ||||| |  |||||||||||||| |||||||||||| | |  ||| |||||||||    
T  48525376 acatataattgtgacatgtgttcatgtgttccctacacacataagaaacttatcttttgtgtctctcaaacactctcacatggaa--gtggtacaatgtg 48525473  T
Q  104 tgtatggagaaaaggatgtccatgaaatattatcc 138  Q
    ||||| ||| ||||| ||| ||||||| |||||||    
T  48525474 tgtatagaggaaagggtgttcatgaaacattatcc 48525508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 41277265 - 41277399
Alignment:
Q  4 acatataattgtgacatgtgttcacgtggtccccacagac---ataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaat 100  Q
    ||||| |||||||||||||||||| |||||||||||| ||   | ||||||||||| |||||||||||||||||| ||||||||  ||  ||| ||||||    
T  41277265 acatacaattgtgacatgtgttcatgtggtccccacacacacaaaaaaaaactcaccttttgtgtctctcacacagtctcacatgata--gtggtacaat 41277362  T
Q  101 gtgtgtatggagaaaaggatgtccatgaaatattatcc 138  Q
    |||||||| ||||||| | |||| | |||| |||||||    
T  41277363 gtgtgtat-gagaaaatggtgtctacgaaacattatcc 41277399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 25784036 - 25783908
Alignment:
Q  8 ataattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgta 107  Q
    ||||||||||||||| |||| || ||||||||| ||| ||||||||||| |||  ||| || ||||||||||||||||| |   || ||||| |||||||    
T  25784036 ataattgtgacatgtattcatgtagtccccacatacacaaaaaactcacttttattgtttcacacacactctcacatagga---tggtacaacgtgtgta 25783940  T
Q  108 tggagaaaaggatgtccatgaaatattatcct 139  Q
    | || |||| ||||| ||||||| ||||||||    
T  25783939 tagaaaaaaagatgttcatgaaacattatcct 25783908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 5817506 - 5817380
Alignment:
Q  10 aattgtgacatgtgttcacgtggtccccacagacat-aaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtat 108  Q
    ||||||||||||||| || |||||||||||| |||  |||||||||| ||||  ||||||  ||||||| | |||| |    ||| ||||||||||||||    
T  5817506 aattgtgacatgtgtccatgtggtccccacacacaccaaaaaactcatatttattgtctcctacacacttttacatggg---gtggtacaatgtgtgtat 5817410  T
Q  109 ggagaaaaggatgtccatgaaatattatcc 138  Q
    |||||||||||||| ||||||| |||||||    
T  5817409 ggagaaaaggatgtacatgaaacattatcc 5817380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 39631099 - 39631008
Alignment:
Q  46 aaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtatggagaaaaggatgtccatgaaatattatcctt 140  Q
    ||||||||||||| |  |||||||||||||||||||||   ||| ||| |||||||||| |||||| ||||| |||| ||||||| |||||||||    
T  39631099 aaaaaactcacatgtattgtctctcacacactctcaca---tagagtggtacaatgtgtatatggaaaaaagtatgtacatgaaacattatcctt 39631008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 40947233 - 40947158
Alignment:
Q  6 atataattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctca 81  Q
    |||||||||| |||||||| ||||||||||  ||| ||| |||||| ||| ||||| |||||||||||||||||||    
T  40947233 atataattgtaacatgtgtccacgtggtccatacacacacaaaaaattcatattttatgtctctcacacactctca 40947158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 14150047 - 14149958
Alignment:
Q  49 aaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtatggagaaaaggatgtccatgaaatattatcctt 140  Q
    |||||||  |||||||||||||| ||||| |||||| | ||  || |||||||||||||| ||||||||| ||| ||||||| |||||||||    
T  14150047 aaactcatcttttgtgtctctcaaacactttcacatggaag--tggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcctt 14149958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 45996020 - 45995888
Alignment:
Q  10 aattgtgacatgtgttcacgtggtc-cccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtat 108  Q
    |||| ||||| ||||||  |||||| |||||| ||| ||||||||||||| |  |||||||||||||||||||||| |    ||| ||||||||||||||    
T  45996020 aattttgacaagtgttcttgtggtctcccacacaca-aaaaaactcacatgtattgtctctcacacactctcacatgga---gtggtacaatgtgtgtat 45995925  T
Q  109 ggagaaaaggatgtccatgaaatattatccttataaa 145  Q
    ||| ||||   ||| ||||||| ||||||| ||||||    
T  45995924 ggaaaaaaatgtgtacatgaaacattatccatataaa 45995888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 26719991 - 26719955
Alignment:
Q  48 aaaactcacattttgtgtctctcacacactctcacat 84  Q
    |||||||||||||||||||||||||||||| ||||||    
T  26719991 aaaactcacattttgtgtctctcacacactgtcacat 26719955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 17044112 - 17044185
Alignment:
Q  63 tgtctctcacacactctcacatagtagcgtgttacaatgtgtgtatggagaaaaggatgtccatgaaatattatcct 139  Q
    |||||||||||||||||||||| |    ||| ||||||||||||||||| |||||  ||| ||||||| ||||||||    
T  17044112 tgtctctcacacactctcacatgga---gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 17044185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 138
Target Start/End: Complemental strand, 25164560 - 25164471
Alignment:
Q  46 aaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtatggagaaaaggatgtccatgaaatattatcc 138  Q
    ||||||||||||| |  |||||||||||||||||||||| |    ||| ||||||||||||||| | |||||  ||| ||||||| |||||||    
T  25164560 aaaaaactcacatgtattgtctctcacacactctcacatgga---gtggtacaatgtgtgtatgcaaaaaagtgtgtacatgaaacattatcc 25164471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 42179263 - 42179217
Alignment:
Q  10 aattgtgacatgtgttcacgtggtccccacagacataaaaaactcac 56  Q
    ||||||||||||||| || |||||||||||| ||| |||||||||||    
T  42179263 aattgtgacatgtgtccatgtggtccccacacacacaaaaaactcac 42179217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 50498266 - 50498315
Alignment:
Q  10 aattgtgacatgtgttcacgtggtccccacagacataaaaaactcacatt 59  Q
    ||||||||||||||| || |||||||||||| ||| || |||||||||||    
T  50498266 aattgtgacatgtgtccatgtggtccccacacacacaagaaactcacatt 50498315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 51579370 - 51579426
Alignment:
Q  4 acatataattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattt 60  Q
    ||||| ||||||||||||||| || ||||| |||||| | | |||||||||||||||    
T  51579370 acatacaattgtgacatgtgtccatgtggttcccacacatacaaaaaactcacattt 51579426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 140
Target Start/End: Original strand, 12248323 - 12248457
Alignment:
Q  4 acatataattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtg 103  Q
    ||||||||||||||||||||| || |||||||| |||  || || |||||||  |||||||||||||| ||||| |||||| | |  ||| |||||||||    
T  12248323 acatataattgtgacatgtgtccatgtggtccctacacgcacaagaaactcatcttttgtgtctctcaaacactatcacatggaa--gtggtacaatgtg 12248420  T
Q  104 tgtatggagaaaaggatgtccatgaaatattatcctt 140  Q
    ||||| ||||||||| ||| ||||||| |||||||||    
T  12248421 tgtatagagaaaagggtgttcatgaaacattatcctt 12248457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 43100340 - 43100208
Alignment:
Q  4 acatataattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtg 103  Q
    ||||||||||||||||||||| || |||||| | ||| ||| || ||| |||  |||||||||||||| ||||| ||||||   |  ||| |||||||||    
T  43100340 acatataattgtgacatgtgtccatgtggtctctacacacacaagaaattcatcttttgtgtctctcaaacactatcacat--gaaagtggtacaatgtg 43100243  T
Q  104 tgtatggagaaaaggatgtccatgaaatattatcc 138  Q
    ||||| ||||||||| ||| ||||||| |||||||    
T  43100242 tgtatagagaaaagggtgttcatgaaacattatcc 43100208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 20151455 - 20151558
Alignment:
Q  33 tccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtatggagaaaaggatgtccatgaaata 132  Q
    |||||||| ||| |||||||||||||||  |||||||||||||||||||||   | | ||| || ||||| |||||||| |||| | ||| |||||||||    
T  20151455 tccccacataca-aaaaaactcacatttattgtctctcacacactctcaca---tggggtggtataatgtatgtatggaaaaaaaggtgtacatgaaata 20151550  T
Q  133 ttatcctt 140  Q
    ||||||||    
T  20151551 ttatcctt 20151558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 140
Target Start/End: Original strand, 11247285 - 11247376
Alignment:
Q  46 aaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtatggagaaaaggatgtccatgaaatattatcctt 140  Q
    ||||||||||||| |  |||||||||||||||||||||| |    ||| ||||||||||||||||| |||||  ||| ||||||| |||||||||    
T  11247285 aaaaaactcacatgtattgtctctcacacactctcacatgga---gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 11247376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 8076359 - 8076438
Alignment:
Q  58 ttttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtatggagaaaaggatgtccatgaaatattatcct 139  Q
    |||||||||||||| |||||||||||| | |  ||| |||||||| ||||| ||||||||| ||| ||||||| ||||||||    
T  8076359 ttttgtgtctctcaaacactctcacatggaa--gtggtacaatgtatgtatagagaaaagggtgttcatgaaacattatcct 8076438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 138
Target Start/End: Original strand, 33687699 - 33687829
Alignment:
Q  6 atataattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtg 105  Q
    ||||||||||||||||||| || ||| || | ||| ||| || |||||||  |||||||||||||| ||||||||| |||  |  ||| |||||| |||     
T  33687699 atataattgtgacatgtgtccatgtgatctctacacacacaagaaactcatcttttgtgtctctcaaacactctcagata--aaagtggtacaatatgta 33687796  T
Q  106 tatggagaaaaggatgtccatgaaatattatcc 138  Q
    ||| |||||||||  || ||||||| |||||||    
T  33687797 tatagagaaaagggagttcatgaaacattatcc 33687829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 139
Target Start/End: Original strand, 13988340 - 13988430
Alignment:
Q  46 aaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtatggagaaaaggatgtccatgaaatattatcct 139  Q
    |||||| |||||| |  |||||||||||||||||||||| |    ||| ||||||||||||||||| |||||  ||| ||||||| ||||||||    
T  13988340 aaaaaagtcacatgtattgtctctcacacactctcacatgga---gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 13988430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 139
Target Start/End: Original strand, 36890469 - 36890559
Alignment:
Q  46 aaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtatggagaaaaggatgtccatgaaatattatcct 139  Q
    ||||||||||||| |  ||||||||| |||||||||||| |    ||| ||||||||||||||||| |||||  ||| ||||||| ||||||||    
T  36890469 aaaaaactcacatgtattgtctctcatacactctcacatcga---gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 36890559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 15285385 - 15285434
Alignment:
Q  10 aattgtgacatgtgttcacgtggtccccacagacataaaaaactcacatt 59  Q
    ||||||||||||||| || |||||||||||| ||| || |||||||||||    
T  15285385 aattgtgacatgtgtccatgtggtccccacatacacaagaaactcacatt 15285434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 16718058 - 16718179
Alignment:
Q  15 tgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtatggagaa 114  Q
    |||||||||| ||  ||||||| ||| ||| || |||||||  |||||||||||||| ||||| |||||| | ||  || |||||||||||||| |||||    
T  16718058 tgacatgtgtccatttggtccctacacacacaagaaactcatcttttgtgtctctcaaacactatcacatggaag--tggtacaatgtgtgtatagagaa 16718155  T
Q  115 aaggatgtccatgaaatattatcc 138  Q
    |||| ||| ||||||| |||||||    
T  16718156 aagggtgttcatgaaacattatcc 16718179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 12748261 - 12748397
Alignment:
Q  4 acatataattgtgacatgtgttcacgtggtccccacagacata-aaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgt 102  Q
    ||||||||||||||||| ||| || ||||| || ||| ||| | ||||| |||  |||||||||||||| |||||||||||| | |  ||| ||||||||    
T  12748261 acatataattgtgacatctgtccatgtggttcctacacacacacaaaaaatcatcttttgtgtctctcaaacactctcacatggaa--gtggtacaatgt 12748358  T
Q  103 gtgtatggagaaaaggatgtccatgaaatattatcctta 141  Q
    ||||||  |||||||| |||  |||||| ||||||||||    
T  12748359 gtgtataaagaaaagggtgtttatgaaacattatcctta 12748397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 9521855 - 9521810
Alignment:
Q  95 tacaatgtgtgtatggagaaaaggatgtccatgaaatattatcctt 140  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||    
T  9521855 tacaatgtgtgtatggagaaaaggatgtacatgaaacattatcctt 9521810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 149
Target Start/End: Original strand, 32720411 - 32720552
Alignment:
Q  6 atataattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtg 105  Q
    |||||||| |||||| |||  ||||| ||| |||| ||||| |||| |||| |||||||||||||||| ||| ||| ||||  | ||| || ||||||||    
T  32720411 atataattatgacatttgtctacgtgatcctcacacacatacaaaattcaccttttgtgtctctcacatactttcaaatag--gagtggtataatgtgtg 32720508  T
Q  106 tatggagaaaaggatgtccatgaaatattatccttataaatatg 149  Q
    |||||| |||| | ||||||| ||  ||||||| ||| ||||||    
T  32720509 tatggaaaaaaaggtgtccataaagcattatccatattaatatg 32720552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 23916028 - 23916151
Alignment:
Q  10 aattgtgacatgtgttcacgtggtccccacagacataaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtatg 109  Q
    ||||||||||||||| || |||||||||||| ||| || ||||||||||          |||||||||||||||| |  | ||| ||||  |||||||||    
T  23916028 aattgtgacatgtgtccatgtggtccccacatacacaagaaactcacat----------tcacacactctcacatgg--gagtggtacatagtgtgtatg 23916115  T
Q  110 gagaaaaggatgtccatgaaatattatccttataaa 145  Q
     |||||||| ||| ||||||| ||||||||||||||    
T  23916116 cagaaaagggtgttcatgaaacattatccttataaa 23916151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 147
Target Start/End: Complemental strand, 14314075 - 14313978
Alignment:
Q  46 aaaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtatggagaaaaggatgtccatgaaatattatccttataaa 145  Q
    |||||| |||||| |  |||||||||||||||||||||||     ||| ||||||||||||||||| |||||  ||| ||||||| ||||||||| ||||    
T  14314075 aaaaaagtcacatgtattgtctctcacacactctcacataaa---gtggtacaatgtgtgtatgga-aaaagtgtgtacatgaaacattatccttttaaa 14313980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 138
Target Start/End: Complemental strand, 34792739 - 34792651
Alignment:
Q  47 aaaaactcacattttgtgtctctcacacactctcacatagtagcgtgttacaatgtgtgtatggagaaaaggatgtccatgaaatattatcc 138  Q
    |||||||||||| |  |||||||||||||||||||||| |    ||| ||||||||||||||| | |||||  ||| ||||||| |||||||    
T  34792739 aaaaactcacatgtattgtctctcacacactctcacatgga---gtggtacaatgtgtgtatgcaaaaaagtgtgtacatgaaacattatcc 34792651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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