View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3537_low_6 (Length: 621)

Name: NF3537_low_6
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3537_low_6
NF3537_low_6
[»] chr5 (15 HSPs)
chr5 (18-98)||(32346614-32346694)
chr5 (130-209)||(32346707-32346788)
chr5 (536-587)||(32347130-32347181)
chr5 (228-306)||(32346825-32346895)
chr5 (534-587)||(31193982-31194035)
chr5 (534-587)||(31194196-31194249)
chr5 (455-486)||(32347048-32347079)
chr5 (536-587)||(36955320-36955371)
chr5 (457-487)||(14076786-14076816)
chr5 (534-587)||(14076900-14076953)
chr5 (534-587)||(17370084-17370137)
chr5 (455-487)||(17370185-17370217)
chr5 (455-487)||(31194116-31194148)
chr5 (455-487)||(39634954-39634986)
chr5 (455-487)||(42546500-42546532)
[»] chr8 (11 HSPs)
chr8 (534-587)||(6911046-6911099)
chr8 (534-587)||(15009089-15009142)
chr8 (534-587)||(14999188-14999241)
chr8 (455-487)||(6911147-6911179)
chr8 (455-487)||(16324962-16324994)
chr8 (534-587)||(8489390-8489443)
chr8 (534-587)||(43801487-43801540)
chr8 (534-587)||(43801702-43801755)
chr8 (455-487)||(22781173-22781205)
chr8 (455-487)||(41403877-41403909)
chr8 (455-487)||(41721945-41721977)
[»] chr3 (13 HSPs)
chr3 (534-587)||(43797369-43797422)
chr3 (535-587)||(38500053-38500105)
chr3 (534-587)||(4041414-4041467)
chr3 (534-587)||(8799334-8799387)
chr3 (534-587)||(38499836-38499889)
chr3 (534-587)||(53197214-53197267)
chr3 (455-487)||(8799434-8799466)
chr3 (455-487)||(38499969-38500001)
chr3 (456-487)||(29828795-29828826)
chr3 (534-576)||(8657427-8657469)
chr3 (534-567)||(43797680-43797713)
chr3 (455-487)||(43797470-43797502)
chr3 (455-487)||(48346129-48346161)
[»] chr1 (18 HSPs)
chr1 (534-587)||(34622556-34622609)
chr1 (534-587)||(27171816-27171869)
chr1 (534-587)||(33400872-33400925)
chr1 (534-587)||(24883199-24883252)
chr1 (535-587)||(3385543-3385595)
chr1 (455-487)||(33400975-33401007)
chr1 (456-487)||(34970103-34970134)
chr1 (457-487)||(39781217-39781247)
chr1 (534-587)||(3385325-3385378)
chr1 (534-587)||(24882988-24883041)
chr1 (534-587)||(33401087-33401140)
chr1 (455-487)||(3385429-3385461)
chr1 (455-487)||(24883087-24883119)
chr1 (455-487)||(27171950-27171982)
chr1 (534-566)||(27172030-27172062)
chr1 (455-487)||(33156573-33156605)
chr1 (455-487)||(37948939-37948971)
chr1 (455-487)||(42082967-42082999)
[»] chr2 (15 HSPs)
chr2 (534-581)||(17200309-17200356)
chr2 (534-588)||(20296647-20296701)
chr2 (534-587)||(4371471-4371524)
chr2 (534-587)||(12232580-12232633)
chr2 (534-587)||(22563227-22563280)
chr2 (534-587)||(17200095-17200148)
chr2 (455-487)||(34645697-34645729)
chr2 (455-486)||(29892950-29892981)
chr2 (534-588)||(21265793-21265847)
chr2 (534-587)||(21265580-21265633)
chr2 (534-587)||(22563441-22563494)
chr2 (534-587)||(34645777-34645830)
chr2 (455-487)||(12232680-12232712)
chr2 (455-487)||(17200196-17200228)
chr2 (455-487)||(22563361-22563393)
[»] chr7 (9 HSPs)
chr7 (534-587)||(35207195-35207248)
chr7 (536-587)||(19318452-19318503)
chr7 (534-587)||(19318379-19318432)
chr7 (534-587)||(35207406-35207459)
chr7 (455-487)||(35207296-35207328)
chr7 (536-587)||(39983870-39983921)
chr7 (455-487)||(19318265-19318297)
chr7 (455-487)||(26903579-26903611)
chr7 (455-487)||(48006242-48006274)
[»] chr6 (4 HSPs)
chr6 (534-587)||(22748605-22748658)
chr6 (457-487)||(11014474-11014504)
chr6 (455-487)||(22748706-22748738)
chr6 (455-487)||(33277424-33277456)
[»] chr4 (9 HSPs)
chr4 (534-587)||(17914979-17915032)
chr4 (534-587)||(54316060-54316113)
chr4 (534-588)||(32591177-32591231)
chr4 (534-587)||(7061989-7062042)
chr4 (534-587)||(50544273-50544326)
chr4 (534-587)||(50551483-50551536)
chr4 (455-487)||(9551375-9551407)
chr4 (459-487)||(21785861-21785889)
chr4 (459-487)||(50544374-50544402)


Alignment Details
Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 32346614 - 32346694
Alignment:
Q  18 aataaaattgaatgaatcagtgttattgtcccctttcccctttctctgggtgaagttcattcatttgattttgcactggag 98  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32346614 aataaaattgaatgaatcagtgttattggcccctttcccctttctctgggtgaagttcattcatttgattttgcactggag 32346694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 32346707 - 32346788
Alignment:
Q  130 agtaagtcaatgttctattcattcctcaattcgacaataagacacgacacgt--tattacgatcacgttttcatgcttcaat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  32346707 agtaagtcaatgttctattcattcctcaattcgacaataagacacgacacgttatattacgatcacgttttcatgcttcaat 32346788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 536 - 587
Target Start/End: Original strand, 32347130 - 32347181
Alignment:
Q  536 cacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32347130 cacatgtcttacatccaaaccttaaatggagtaattggagcttagcctaaat 32347181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 228 - 306
Target Start/End: Original strand, 32346825 - 32346895
Alignment:
Q  228 gtaattcaaacaatgatttggtctaagaggtaaaatattttagtcatttaagcaaatgattatggattcgatttataat 306  Q
    ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32346825 gtaattcaaacaatgatttggt--------taaaatattttagtcatttaagcaaatgattatggattcaatttataat 32346895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 31194035 - 31193982
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||| ||| ||||||||||||||||||| |||||||||||||||||    
T  31194035 gccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaat 31193982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 534 - 587
Target Start/End: Original strand, 31194196 - 31194249
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||| ||| ||||||||||||||||||| |||||||||||||||||    
T  31194196 gccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaat 31194249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 486
Target Start/End: Original strand, 32347048 - 32347079
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaa 486  Q
    ||||||||||||||||||||||||||||||||    
T  32347048 tcatgttcccttcttctctcatatcgcaacaa 32347079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 587
Target Start/End: Complemental strand, 36955371 - 36955320
Alignment:
Q  536 cacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||| ||| |||||| |||||||||||| || ||||||||||||||    
T  36955371 cacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaat 36955320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 457 - 487
Target Start/End: Complemental strand, 14076816 - 14076786
Alignment:
Q  457 atgttcccttcttctctcatatcgcaacaac 487  Q
    |||||||||||||||||||||||||||||||    
T  14076816 atgttcccttcttctctcatatcgcaacaac 14076786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 587
Target Start/End: Original strand, 14076900 - 14076953
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||| ||| |||||| |||||||||||| | || ||||||||||||    
T  14076900 gccacatgtcttgcatccaaaccctaaatggagtaaatagaacttagcctaaat 14076953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 17370137 - 17370084
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||| ||| |||||| |||||||||||| ||||| ||||| |||||    
T  17370137 gccacatgtcttgcatccaaaccctaaatggagtaaatggagtttagcataaat 17370084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 487
Target Start/End: Complemental strand, 17370217 - 17370185
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    |||||||||||||||||||||||| ||||||||    
T  17370217 tcatgttcccttcttctctcatattgcaacaac 17370185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 487
Target Start/End: Original strand, 31194116 - 31194148
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    |||||||||||||||||||||||| ||||||||    
T  31194116 tcatgttcccttcttctctcatatggcaacaac 31194148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 487
Target Start/End: Original strand, 39634954 - 39634986
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    |||||||| ||||||||||||||||||||||||    
T  39634954 tcatgttctcttcttctctcatatcgcaacaac 39634986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 487
Target Start/End: Original strand, 42546500 - 42546532
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    ||||||||| |||||||||||||||||||||||    
T  42546500 tcatgttccattcttctctcatatcgcaacaac 42546532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 6911099 - 6911046
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||||||| |||||| |||||||||||| |||||||||||||||||    
T  6911099 gccacatgtcttacatccaaaccctaaatggagtaaatggagcttagcctaaat 6911046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 534 - 587
Target Start/End: Original strand, 15009089 - 15009142
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||||||| |||||| |||||||||||| || ||||||||||||||    
T  15009089 gccacatgtcttacatccaaaccctaaatggagtaaatgaagcttagcctaaat 15009142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 14999241 - 14999188
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||| ||| |||||| |||||||||||| | |||||||||||||||    
T  14999241 gccacatgtcttgcatccaaaccctaaatggagtaaattgagcttagcctaaat 14999188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 455 - 487
Target Start/End: Complemental strand, 6911179 - 6911147
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    |||||||||||||||||||||||||||||||||    
T  6911179 tcatgttcccttcttctctcatatcgcaacaac 6911147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 455 - 487
Target Start/End: Complemental strand, 16324994 - 16324962
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    |||||||||||||||||||||||||||||||||    
T  16324994 tcatgttcccttcttctctcatatcgcaacaac 16324962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 8489443 - 8489390
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||||||| |||||| |||||||| ||| || |||||| |||||||    
T  8489443 gccacatgtcttacatccaaaccctaaatggaataaatgaagcttaacctaaat 8489390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 43801540 - 43801487
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||||||| |||||  |||||||||||| || || |||||||||||    
T  43801540 gccacatgtcttacatccaaactctaaatggagtaaatgaagtttagcctaaat 43801487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 587
Target Start/End: Original strand, 43801702 - 43801755
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    ||||||| |||| ||| |||||  |||||||||||| |||||||||||||||||    
T  43801702 gccacatatcttgcatccaaactctaaatggagtaaatggagcttagcctaaat 43801755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 487
Target Start/End: Complemental strand, 22781205 - 22781173
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    ||||||||||||||||| |||||||||||||||    
T  22781205 tcatgttcccttcttctttcatatcgcaacaac 22781173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 487
Target Start/End: Complemental strand, 41403909 - 41403877
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    ||||||| |||||||||||||||||||||||||    
T  41403909 tcatgtttccttcttctctcatatcgcaacaac 41403877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 487
Target Start/End: Complemental strand, 41721977 - 41721945
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    ||||||||||||||||||||||||| |||||||    
T  41721977 tcatgttcccttcttctctcatatcacaacaac 41721945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 43797422 - 43797369
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||| ||| ||||||||||||||||||| |||||||||||||||||    
T  43797422 gccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaat 43797369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 535 - 587
Target Start/End: Original strand, 38500053 - 38500105
Alignment:
Q  535 ccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    ||||||||||||||| |||||| ||| |||||||| |||||||||||||||||    
T  38500053 ccacatgtcttacatccaaaccctaattggagtaaatggagcttagcctaaat 38500105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 534 - 587
Target Start/End: Original strand, 4041414 - 4041467
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||| ||| |||||| |||||||||||| || ||||||||||||||    
T  4041414 gccacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaat 4041467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 8799387 - 8799334
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||| ||| |||||| |||||||||||| |||||| ||||||||||    
T  8799387 gccacatgtcttgcatccaaaccctaaatggagtaaatggagcctagcctaaat 8799334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 38499889 - 38499836
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    ||||||||||||  || |||||| |||||||||||| |||||||||||||||||    
T  38499889 gccacatgtcttgtatccaaaccctaaatggagtaaatggagcttagcctaaat 38499836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 534 - 587
Target Start/End: Original strand, 53197214 - 53197267
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||| ||| |||||| |||||||||||| || ||||||||||||||    
T  53197214 gccacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaat 53197267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 455 - 487
Target Start/End: Complemental strand, 8799466 - 8799434
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    |||||||||||||||||||||||||||||||||    
T  8799466 tcatgttcccttcttctctcatatcgcaacaac 8799434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 455 - 487
Target Start/End: Original strand, 38499969 - 38500001
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    |||||||||||||||||||||||||||||||||    
T  38499969 tcatgttcccttcttctctcatatcgcaacaac 38500001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 487
Target Start/End: Complemental strand, 29828826 - 29828795
Alignment:
Q  456 catgttcccttcttctctcatatcgcaacaac 487  Q
    ||||||||||||||||||||||||||||||||    
T  29828826 catgttcccttcttctctcatatcgcaacaac 29828795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 576
Target Start/End: Complemental strand, 8657469 - 8657427
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagc 576  Q
    |||||||||||| |||||||||| |||||||||||| ||||||    
T  8657469 gccacatgtcttgcattcaaaccctaaatggagtaaatggagc 8657427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 567
Target Start/End: Complemental strand, 43797713 - 43797680
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagt 567  Q
    |||||||||||||||| |||||||||||||||||    
T  43797713 gccacatgtcttacatccaaaccttaaatggagt 43797680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 487
Target Start/End: Complemental strand, 43797502 - 43797470
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    |||||||||||||||||||||||| ||||||||    
T  43797502 tcatgttcccttcttctctcatatggcaacaac 43797470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 487
Target Start/End: Original strand, 48346129 - 48346161
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    |||||||| ||||||||||||||||||||||||    
T  48346129 tcatgttctcttcttctctcatatcgcaacaac 48346161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 534 - 587
Target Start/End: Original strand, 34622556 - 34622609
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||| ||||||    
T  34622556 gccacatgtcttgcattcaaaccttaaatggagtaactggagcttagtctaaat 34622609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 27171869 - 27171816
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||||||| |||||| |||||||||||| || ||||||||||||||    
T  27171869 gccacatgtcttacatccaaaccataaatggagtaaatgaagcttagcctaaat 27171816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 33400925 - 33400872
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||| ||||||| ||||||||||||||||||| ||||||||||| |||||    
T  33400925 gccacatgccttacatccaaaccttaaatggagtaaatggagcttagcttaaat 33400872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 534 - 587
Target Start/End: Original strand, 24883199 - 24883252
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    ||||||| |||| ||| |||||| |||||||||||| |||||||||||||||||    
T  24883199 gccacatatcttgcatccaaaccctaaatggagtaaatggagcttagcctaaat 24883252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 535 - 587
Target Start/End: Original strand, 3385543 - 3385595
Alignment:
Q  535 ccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||| |||||||| |||||| |||||||||||| |||||||| ||||||||    
T  3385543 ccacatatcttacatccaaaccctaaatggagtaaatggagcttggcctaaat 3385595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 455 - 487
Target Start/End: Complemental strand, 33401007 - 33400975
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    |||||||||||||||||||||||||||||||||    
T  33401007 tcatgttcccttcttctctcatatcgcaacaac 33400975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 487
Target Start/End: Complemental strand, 34970134 - 34970103
Alignment:
Q  456 catgttcccttcttctctcatatcgcaacaac 487  Q
    ||||||||||||||||||||||||||||||||    
T  34970134 catgttcccttcttctctcatatcgcaacaac 34970103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 457 - 487
Target Start/End: Original strand, 39781217 - 39781247
Alignment:
Q  457 atgttcccttcttctctcatatcgcaacaac 487  Q
    |||||||||||||||||||||||||||||||    
T  39781217 atgttcccttcttctctcatatcgcaacaac 39781247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 3385378 - 3385325
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||||||| |||||| ||||||| ||||  | ||||||||||||||    
T  3385378 gccacatgtcttacatccaaaccctaaatggggtaaacgaagcttagcctaaat 3385325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 24883041 - 24882988
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    ||||| |||||| ||| |||||| |||||||||||| ||||| |||||||||||    
T  24883041 gccacgtgtcttgcatccaaaccctaaatggagtaaatggagattagcctaaat 24882988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 587
Target Start/End: Original strand, 33401087 - 33401140
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    ||||||||||||||||  |||||||||||  ||||| | |||||||||||||||    
T  33401087 gccacatgtcttacatctaaaccttaaataaagtaaattgagcttagcctaaat 33401140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 487
Target Start/End: Complemental strand, 3385461 - 3385429
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    |||||||| ||||||||||||||||||||||||    
T  3385461 tcatgttctcttcttctctcatatcgcaacaac 3385429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 487
Target Start/End: Complemental strand, 24883119 - 24883087
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    |||||||| ||||||||||||||||||||||||    
T  24883119 tcatgttctcttcttctctcatatcgcaacaac 24883087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 487
Target Start/End: Original strand, 27171950 - 27171982
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    ||||||||||||||||||||||||| |||||||    
T  27171950 tcatgttcccttcttctctcatatcacaacaac 27171982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 566
Target Start/End: Original strand, 27172030 - 27172062
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggag 566  Q
    |||||||||||||||| ||||||||||||||||    
T  27172030 gccacatgtcttacatccaaaccttaaatggag 27172062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 487
Target Start/End: Complemental strand, 33156605 - 33156573
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    ||||||||||||||||||||||||| |||||||    
T  33156605 tcatgttcccttcttctctcatatcacaacaac 33156573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 487
Target Start/End: Original strand, 37948939 - 37948971
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    ||||||||| |||||||||||||||||||||||    
T  37948939 tcatgttcctttcttctctcatatcgcaacaac 37948971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 487
Target Start/End: Original strand, 42082967 - 42082999
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    ||||||||||||||||||||||||| |||||||    
T  42082967 tcatgttcccttcttctctcatatcacaacaac 42082999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 534 - 581
Target Start/End: Original strand, 17200309 - 17200356
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagc 581  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||    
T  17200309 gccacatgtcttacatccaaaccttaaatggagtaaatggagcttagc 17200356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 534 - 588
Target Start/End: Original strand, 20296647 - 20296701
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaata 588  Q
    |||||||||||||||| |||  |||||||||||||| ||||||||||||||||||    
T  20296647 gccacatgtcttacatccaattcttaaatggagtaaatggagcttagcctaaata 20296701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 4371524 - 4371471
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||| ||| |||||| |||||||||||| |||||||||||||||||    
T  4371524 gccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaat 4371471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 12232633 - 12232580
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||||||| |||||| ||||| |||||| |||||||||||||||||    
T  12232633 gccacatgtcttacatccaaaccctaaatagagtaaatggagcttagcctaaat 12232580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 22563280 - 22563227
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||| ||| |||||| |||||||||||| |||||||||||||||||    
T  22563280 gccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaat 22563227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 17200148 - 17200095
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||||||| |||| | |||||||||||| |||||||| ||||||||    
T  17200148 gccacatgtcttacatccaaatcctaaatggagtaaatggagctttgcctaaat 17200095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 455 - 487
Target Start/End: Original strand, 34645697 - 34645729
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    |||||||||||||||||||||||||||||||||    
T  34645697 tcatgttcccttcttctctcatatcgcaacaac 34645729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 486
Target Start/End: Original strand, 29892950 - 29892981
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaa 486  Q
    ||||||||||||||||||||||||||||||||    
T  29892950 tcatgttcccttcttctctcatatcgcaacaa 29892981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 588
Target Start/End: Original strand, 21265793 - 21265847
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaata 588  Q
    |||||||||||| ||| |||||| ||||| |||||| ||||||||||| ||||||    
T  21265793 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcttaaata 21265847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 21265633 - 21265580
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||| ||| |||||| |||||||||||| | |||||||| ||||||    
T  21265633 gccacatgtcttgcatccaaaccctaaatggagtaaattgagcttagtctaaat 21265580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 587
Target Start/End: Original strand, 22563441 - 22563494
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||| ||| |||| | |||||||||||| ||||| |||||||||||    
T  22563441 gccacatgtcttgcatccaaatcctaaatggagtaaatggagtttagcctaaat 22563494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 587
Target Start/End: Original strand, 34645777 - 34645830
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||||||| |||||| |||||||| ||| ||||| | |||||||||    
T  34645777 gccacatgtcttacatccaaaccctaaatggaataaatggagttaagcctaaat 34645830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 487
Target Start/End: Complemental strand, 12232712 - 12232680
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    |||||||||||||||||||||| ||||||||||    
T  12232712 tcatgttcccttcttctctcatgtcgcaacaac 12232680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 487
Target Start/End: Complemental strand, 17200228 - 17200196
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    ||||||||||||||||||||||||| |||||||    
T  17200228 tcatgttcccttcttctctcatatcacaacaac 17200196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 487
Target Start/End: Original strand, 22563361 - 22563393
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    ||||||||||||||||||||| |||||||||||    
T  22563361 tcatgttcccttcttctctcacatcgcaacaac 22563393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 35207248 - 35207195
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||| ||| |||||| |||||||||||| |||||||||||||||||    
T  35207248 gccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaat 35207195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 536 - 587
Target Start/End: Original strand, 19318452 - 19318503
Alignment:
Q  536 cacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||| |||  |||||||||||||||||| |||||||||||||||||    
T  19318452 cacatgtcttgcatctaaaccttaaatggagtaaatggagcttagcctaaat 19318503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 534 - 587
Target Start/End: Original strand, 19318379 - 19318432
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||| |||  |||||||||||||||||| || ||||||||||||||    
T  19318379 gccacatgtcttgcatctaaaccttaaatggagtaaatgaagcttagcctaaat 19318432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 534 - 587
Target Start/End: Original strand, 35207406 - 35207459
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||| ||| |||||| |||||||||||| ||||| |||||||||||    
T  35207406 gccacatgtcttgcatccaaaccctaaatggagtaaatggagtttagcctaaat 35207459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 455 - 487
Target Start/End: Complemental strand, 35207328 - 35207296
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    |||||||||||||||||||||||||||||||||    
T  35207328 tcatgttcccttcttctctcatatcgcaacaac 35207296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 587
Target Start/End: Original strand, 39983870 - 39983921
Alignment:
Q  536 cacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||| ||| |||||| |||||||||||| |||||||| ||||||||    
T  39983870 cacatgtcttgcatccaaaccctaaatggagtaaatggagcttcgcctaaat 39983921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 487
Target Start/End: Complemental strand, 19318297 - 19318265
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    ||||||||| |||||||||||||||||||||||    
T  19318297 tcatgttcctttcttctctcatatcgcaacaac 19318265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 487
Target Start/End: Original strand, 26903579 - 26903611
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    |||||||| ||||||||||||||||||||||||    
T  26903579 tcatgttctcttcttctctcatatcgcaacaac 26903611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 487
Target Start/End: Complemental strand, 48006274 - 48006242
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    ||||||||||||||| |||||||||||||||||    
T  48006274 tcatgttcccttcttttctcatatcgcaacaac 48006242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 22748658 - 22748605
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||| ||| |||| |||||||||||||| |||||| ||||||||||    
T  22748658 gccacatgtcttgcatccaaatcttaaatggagtaaatggagcatagcctaaat 22748605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 457 - 487
Target Start/End: Original strand, 11014474 - 11014504
Alignment:
Q  457 atgttcccttcttctctcatatcgcaacaac 487  Q
    |||||||||||||||||||||||||||||||    
T  11014474 atgttcccttcttctctcatatcgcaacaac 11014504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 487
Target Start/End: Complemental strand, 22748738 - 22748706
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    |||||||||||||||||||||||| ||||||||    
T  22748738 tcatgttcccttcttctctcatatggcaacaac 22748706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 487
Target Start/End: Complemental strand, 33277456 - 33277424
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    ||||||||| |||||||||||||||||||||||    
T  33277456 tcatgttccattcttctctcatatcgcaacaac 33277424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 534 - 587
Target Start/End: Original strand, 17914979 - 17915032
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||| ||| ||||| ||||||||||||| |||| ||||||||||||    
T  17914979 gccacatgtcttgcatccaaactttaaatggagtaaatggaacttagcctaaat 17915032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 534 - 587
Target Start/End: Original strand, 54316060 - 54316113
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||| ||| |||||| |||||||||||| | |||||||||||||||    
T  54316060 gccacatgtcttgcatccaaaccctaaatggagtaaatagagcttagcctaaat 54316113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 588
Target Start/End: Complemental strand, 32591231 - 32591177
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaata 588  Q
    ||||||| | || ||| ||||||||||||||||||| ||||||||| ||||||||    
T  32591231 gccacatattttgcatacaaaccttaaatggagtaaatggagcttaacctaaata 32591177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 7062042 - 7061989
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||| ||| |||||| |||||||||||| | ||| |||||||||||    
T  7062042 gccacatgtcttgcatccaaaccataaatggagtaaatagaggttagcctaaat 7061989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 50544326 - 50544273
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    |||||||||||| ||| |||||| ||||| || ||| |||||||||||||||||    
T  50544326 gccacatgtcttgcatccaaaccctaaatagaataaatggagcttagcctaaat 50544273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 587
Target Start/End: Original strand, 50551483 - 50551536
Alignment:
Q  534 gccacatgtcttacattcaaaccttaaatggagtaattggagcttagcctaaat 587  Q
    ||||||| |||||||| ||||||||||||||||||| |  || |||||||||||    
T  50551483 gccacatatcttacatccaaaccttaaatggagtaaataaagtttagcctaaat 50551536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 487
Target Start/End: Original strand, 9551375 - 9551407
Alignment:
Q  455 tcatgttcccttcttctctcatatcgcaacaac 487  Q
    ||||||||||||||||||||||| |||||||||    
T  9551375 tcatgttcccttcttctctcataacgcaacaac 9551407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 459 - 487
Target Start/End: Original strand, 21785861 - 21785889
Alignment:
Q  459 gttcccttcttctctcatatcgcaacaac 487  Q
    |||||||||||||||||||||||||||||    
T  21785861 gttcccttcttctctcatatcgcaacaac 21785889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 459 - 487
Target Start/End: Complemental strand, 50544402 - 50544374
Alignment:
Q  459 gttcccttcttctctcatatcgcaacaac 487  Q
    |||||||||||||||||||||||||||||    
T  50544402 gttcccttcttctctcatatcgcaacaac 50544374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University