View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_low_61 (Length: 240)
Name: NF3537_low_61
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 44082917 - 44082696
Alignment:
| Q |
1 |
ccttagttgttattatcttattaattactttgcttcttcaagttgatctaagggttattcttttaattttaaaaattacacagatatagttgaagacaac |
100 |
Q |
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| T |
44082917 |
ccttagttgttattatcttattaattactttgcttcttcaagttgatctaagggttattcttttaattttaaaaattacacagatatagttgaagacaac |
44082818 |
T |
|
| Q |
101 |
caagcccaatttccccatttgaactatttattttgtacatcaaataatgcacttttcttttctatcaccaactaatgctgttcaaataatgcatttttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44082817 |
caagcccaatttccccatttgaactatttattttgtacatcaaataatgcacttttcttttctatcaccaactaatgctgttcaaataatgcatttttta |
44082718 |
T |
|
| Q |
201 |
tttataattgaatagaagagat |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
44082717 |
tttataattgaatagaagagat |
44082696 |
T |
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